Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5927 Trifolium pratense HOM05D015964 ORTHO05D010903 6.5e-186 654.1 367 100.0
TPR.G18923 Trifolium pratense HOM05D000399 ORTHO05D000304 2.0e-49 200.7 105 87.6
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 7.5e-49 198.7 105 86.7
TPR.G40864 Trifolium pratense HOM05D000451 ORTHO05D013665 2.9e-48 196.8 96 94.8
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 2.8e-43 180.3 105 81.0
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 7.5e-41 172.2 105 75.2
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 6.4e-40 169.1 105 71.4
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 2.4e-39 167.2 105 71.4
Psat1g166760 Pisum sativum HOM05D000399 ORTHO05D000304 3.2e-39 166.8 105 73.3
Psat4g150000 Pisum sativum HOM05D000451 ORTHO05D013665 5.4e-39 166.0 98 82.7
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.9e-37 159.8 105 68.6
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 6.8e-34 149.1 105 64.8
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 3.5e-30 136.7 105 62.9
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 7.8e-30 135.6 105 58.1
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 8.7e-29 132.1 105 58.1
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 7.3e-28 129.0 105 55.2
Lj2g0021776 Lotus japonicus HOM05D000451 ORTHO05D013665 1.2e-27 128.3 119 60.5
Lj4g0006003 Lotus japonicus HOM05D000451 ORTHO05D000351 6.2e-27 125.9 133 51.9
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.9e-23 114.4 108 52.8
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 4.2e-23 113.2 92 59.8
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 7.1e-23 112.5 109 50.5
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 3.5e-22 110.2 92 57.6
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 4.6e-22 109.8 108 49.1
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 7.8e-22 109.0 108 50.0
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 2.3e-21 107.5 108 50.9
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 8.7e-21 105.5 103 48.5
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 8.7e-21 105.5 108 50.0
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.9e-20 104.4 108 50.9
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-18 98.6 103 46.6
Psat4g183920 Pisum sativum HOM05D010975 ORTHO05D010903 1.8e-18 97.8 77 59.7
VMungo0540G2370 Vigna mungo HOM05D000399 ORTHO05D000304 1.8e-18 97.8 103 48.5
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.5e-17 94.7 108 47.2
Psat0s3719g0240 Pisum sativum HOM05D010975 ORTHO05D010903 3.2e-15 87.0 74 56.8
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 3.5e-14 83.6 119 39.5
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 3.5e-14 83.6 112 42.0
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 1.0e-13 82.0 101 42.6
Medtr1g063400 Medicago truncatula HOM05D000399 ORTHO05D000304 2.3e-13 80.9 56 60.7
TPR.G40488 Trifolium pratense HOM05D015964 ORTHO05D010903 3.0e-13 80.5 77 51.9
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.7e-13 79.3 94 46.8
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 6.7e-13 79.3 106 43.4
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 8.7e-13 79.0 115 37.4
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-12 78.6 94 46.8
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.9e-12 77.8 112 38.4
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.9e-12 77.8 112 38.4
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.9e-12 77.8 112 38.4
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 4.3e-12 76.6 116 38.8
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.6e-12 76.3 101 40.6
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 9.6e-12 75.5 101 40.6
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 1.6e-11 74.7 116 37.1
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 2.8e-11 73.9 102 40.2
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.8e-11 73.9 113 41.6
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 2.8e-11 73.9 114 39.5
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.7e-11 73.6 113 41.6
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 3.7e-11 73.6 112 36.6
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 4.8e-11 73.2 107 43.0
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.8e-11 73.2 118 36.4
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.8e-11 73.2 87 44.8
Cpa.g.sc123.45 Carica papaya HOM05D000399 ORTHO05D000304 6.2e-11 72.8 164 34.8
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 6.2e-11 72.8 102 40.2
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 6.2e-11 72.8 118 36.4
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.2e-11 72.8 118 36.4
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 8.1e-11 72.4 100 41.0
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.1e-10 72.0 93 46.2
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.1e-10 72.0 114 41.2
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.1e-10 72.0 106 42.5
arahy.Tifrunner.gnm1.ann1.02FWCT Arachis hypogaea HOM05D000399 ORTHO05D000304 1.4e-10 71.6 97 40.2
arahy.Tifrunner.gnm1.ann1.MX0L3B Arachis hypogaea HOM05D000399 ORTHO05D000304 1.8e-10 71.2 97 41.2
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.8e-10 71.2 111 41.4
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 2.4e-10 70.9 110 38.2
TPR.G9385 Trifolium pratense HOM05D015964 ORTHO05D010903 2.4e-10 70.9 76 46.1
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.1e-10 70.5 107 42.1
Lj1g0009784 Lotus japonicus HOM05D000399 ORTHO05D000304 3.1e-10 70.5 112 37.5
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 3.1e-10 70.5 112 35.7
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.3e-10 69.7 139 31.7
CiPaw.08G113100 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.3e-10 69.7 97 43.3
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.3e-10 69.7 87 43.7
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.9e-10 69.3 113 40.7
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 6.9e-10 69.3 98 38.8
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 9.0e-10 68.9 115 35.7
CSS0018580 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.0e-10 68.9 113 36.3
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.2e-09 68.6 99 40.4
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.2e-09 68.6 98 37.8
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 1.5e-09 68.2 97 41.2
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.5e-09 68.2 115 37.4
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 1.5e-09 68.2 94 39.4
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 2.0e-09 67.8 119 39.5
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 2.0e-09 67.8 110 36.4
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 2.6e-09 67.4 176 35.2
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 2.6e-09 67.4 74 43.2
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 4.5e-09 66.6 92 39.1
Haze_08206 Corylus avellana HOM05D000732 ORTHO05D001037 4.5e-09 66.6 101 39.6
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 4.5e-09 66.6 109 35.8
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.8e-09 66.2 113 37.2
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 5.8e-09 66.2 107 41.1
Haze_08207 Corylus avellana HOM05D000480 ORTHO05D000313 7.6e-09 65.9 98 39.8
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 7.6e-09 65.9 113 36.3
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 9.9e-09 65.5 111 36.0
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 9.9e-09 65.5 100 40.0
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 9.9e-09 65.5 100 39.0
Psat4g206520 Pisum sativum HOM05D015964 ORTHO05D015958 9.9e-09 65.5 72 45.8
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 1.3e-08 65.1 100 40.0
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.2e-08 64.3 91 39.6
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.2e-08 64.3 111 35.1
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 2.2e-08 64.3 120 36.7
Oeu034993.1 Olea europaea HOM05D000399 ORTHO05D000304 2.2e-08 64.3 92 44.6
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 2.2e-08 64.3 81 43.2
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.2e-08 64.3 87 42.5
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 2.2e-08 64.3 87 42.5
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.9e-08 63.9 111 36.9
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 2.9e-08 63.9 87 40.2
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 2.9e-08 63.9 117 34.2
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 2.9e-08 63.9 92 39.1
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.8e-08 63.5 100 41.0
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.8e-08 63.5 111 36.9
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 4.9e-08 63.2 98 34.7
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 4.9e-08 63.2 111 34.2
TPR.G1847 Trifolium pratense HOM05D000451 ORTHO05D000351 4.9e-08 63.2 129 38.0
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 6.4e-08 62.8 116 35.3
Cc06_g19980 Coffea canephora HOM05D000399 ORTHO05D000304 6.4e-08 62.8 87 41.4
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 6.4e-08 62.8 87 43.7
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 8.4e-08 62.4 184 29.9
Psat0s1818g0080 Pisum sativum HOM05D015964 ORTHO05D015958 8.4e-08 62.4 68 47.1
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.1e-07 62.0 91 38.5
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 1.1e-07 62.0 87 42.5
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 1.4e-07 61.6 81 40.7
Cc02_g14920 Coffea canephora HOM05D000399 ORTHO05D000304 1.4e-07 61.6 84 42.9
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 1.4e-07 61.6 113 38.1
Nitab4.5_0005002g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.4e-07 61.6 78 39.7
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.4e-07 61.6 85 41.2
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 1.4e-07 61.6 87 41.4
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 1.9e-07 61.2 87 40.2
Cc02_g14900 Coffea canephora HOM05D000399 ORTHO05D000304 1.9e-07 61.2 87 41.4
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.9e-07 61.2 120 34.2
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-07 61.2 87 40.2
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-07 61.2 87 42.5
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.9e-07 61.2 87 41.4
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 2.4e-07 60.8 87 37.9
Prupe.7G047700 Prunus persica HOM05D000399 ORTHO05D000304 2.4e-07 60.8 89 40.4
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 2.4e-07 60.8 88 39.8
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.4e-07 60.8 121 36.4
Phvul.006G111800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.2e-07 60.5 90 36.7
Cc02_g14930 Coffea canephora HOM05D000399 ORTHO05D000304 5.5e-07 59.7 88 38.6
Nn4g22024 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.5e-07 59.7 115 36.5
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.5e-07 59.7 87 41.4
Psat0s3719g0080 Pisum sativum HOM05D015964 ORTHO05D010903 7.1e-07 59.3 65 46.2
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 9.3e-07 58.9 83 44.6
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.2e-06 58.5 92 35.9
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 1.2e-06 58.5 110 36.4
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.6e-06 58.2 184 29.3
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 1.6e-06 58.2 94 34.0
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 1.6e-06 58.2 87 40.2
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 2.1e-06 57.8 112 34.8
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 2.1e-06 57.8 86 41.9
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.1e-06 57.8 95 37.9
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 3.5e-06 57.0 90 37.8
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 4.6e-06 56.6 111 32.4
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 4.6e-06 56.6 125 35.2
Psat0s3719g0160 Pisum sativum HOM05D015964 ORTHO05D010903 7.9e-06 55.8 65 43.1
vmacro19579 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 7.9e-06 55.8 114 35.1
VMungo0540G2272 Vigna mungo HOM05D000399 ORTHO05D000304 7.9e-06 55.8 164 28.0


User provided reference genes

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