Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 4.9e-274 947.2 478 100.0
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-226 789.6 466 86.9
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.3e-226 789.6 466 86.9
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 3.8e-226 788.1 462 86.8
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.0e-211 739.2 477 78.8
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 3.0e-199 698.7 481 76.7
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 9.7e-198 693.7 398 88.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 7.7e-195 684.1 465 76.6
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 1.5e-193 679.9 466 75.5
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.0e-186 657.1 490 70.2
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.7e-186 656.4 490 69.4
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 2.2e-186 656.0 470 71.3
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 2.1e-168 596.3 430 68.4
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 4.0e-167 592.0 431 68.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 3.5e-163 578.9 435 64.6
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 6.6e-162 574.7 431 65.9
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.6e-160 570.1 439 63.6
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.1e-156 557.4 464 59.9
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 3.2e-156 555.8 415 66.0
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.6e-155 553.5 440 61.8
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 2.0e-155 553.1 436 62.6
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 1.0e-154 550.8 434 64.1
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 2.3e-154 549.7 480 59.2
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.9e-154 548.9 440 61.8
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 3.9e-154 548.9 440 61.8
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 6.6e-154 548.1 459 61.2
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 8.6e-154 547.7 437 63.8
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.5e-153 546.2 449 61.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 6.2e-152 541.6 456 61.0
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 4.0e-151 538.9 428 63.3
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.5e-150 537.0 439 61.5
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 2.6e-150 536.2 435 61.8
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 9.8e-150 534.3 468 59.4
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 3.7e-149 532.3 405 65.9
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 4.9e-149 531.9 402 66.4
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.1e-148 530.8 429 62.2
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.4e-148 530.4 443 62.1
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 1.9e-148 530.0 559 50.8
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 3.2e-148 529.3 416 63.0
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.6e-147 525.4 440 61.6
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 5.1e-146 521.9 400 65.2
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 1.1e-145 520.8 458 58.5
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 1.6e-144 516.9 465 57.8
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 1.6e-144 516.9 427 60.9
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 2.1e-144 516.5 411 62.3
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.8e-143 513.5 461 59.9
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 6.8e-143 511.5 433 59.4
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 6.8e-143 511.5 433 59.4
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 9.9e-142 507.7 432 59.5
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.3e-141 507.3 417 61.9
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 1.3e-141 507.3 418 61.0
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.7e-141 506.9 432 59.3
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 1.7e-141 506.9 448 58.7
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.7e-141 506.9 401 63.3
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.2e-141 506.5 485 57.1
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 2.9e-141 506.1 430 60.0
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 4.9e-141 505.4 461 57.7
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 4.9e-141 505.4 475 57.1
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 1.1e-140 504.2 430 59.5
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.9e-140 503.4 446 57.6
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.9e-140 503.4 430 59.5
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 3.2e-140 502.7 430 59.3
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 3.2e-140 502.7 443 59.1
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 5.4e-140 501.9 489 54.6
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.2e-139 500.7 487 54.2
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 2.7e-139 499.6 457 57.8
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 6.0e-139 498.4 467 57.4
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.3e-138 497.3 423 59.6
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.3e-138 496.5 489 54.2
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.3e-138 496.5 417 59.7
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 3.9e-138 495.7 454 56.4
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 5.1e-138 495.4 434 58.5
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 5.1e-138 495.4 439 57.2
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 4.3e-137 492.3 415 60.0
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 6.2e-136 488.4 407 59.2
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 8.9e-135 484.6 421 58.9
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.0e-134 483.4 441 57.6
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.6e-134 483.0 439 57.9
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 4.4e-134 482.3 428 57.9
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 3.8e-133 479.2 464 54.1
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 8.4e-133 478.0 458 54.6
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 8.4e-133 478.0 458 54.6
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.1e-132 477.6 424 56.6
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.9e-132 476.9 358 63.7
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 3.2e-132 476.1 458 55.2
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 1.6e-131 473.8 406 60.1
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.3e-128 464.2 387 59.7
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 6.2e-128 461.8 392 60.2
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 3.1e-127 459.5 426 57.0
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 7.6e-126 454.9 420 56.7
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 1.3e-125 454.1 455 52.3
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.6e-123 447.2 420 54.8
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 9.6e-121 438.0 366 61.2
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 6.4e-117 425.2 496 48.4
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.4e-116 423.3 435 53.8
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.7e-112 409.5 355 58.6
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.1e-112 408.3 555 44.5
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.6e-107 394.0 461 46.6
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.0e-106 391.3 320 61.9
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 2.1e-104 383.6 440 49.1
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 7.6e-102 375.2 516 42.1
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.2e-100 369.8 442 48.0
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 9.3e-100 368.2 309 59.9
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.3e-93 347.8 316 57.3
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 2.6e-81 307.0 270 59.3
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 3.1e-79 300.1 293 53.9
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 7.2e-76 288.9 246 57.3
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 6.1e-75 285.8 467 39.6
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.4e-71 273.9 414 40.1
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 7.7e-62 242.3 527 31.9
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.9e-52 211.1 126 77.8
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.9e-52 211.1 126 77.8
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.8e-50 202.6 188 52.1
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 6.8e-42 176.0 282 38.7
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 3.4e-41 173.7 113 77.9
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 4.9e-40 169.9 113 75.2
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.6e-38 164.9 132 62.9
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 6.4e-32 142.9 122 58.2
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 8.6e-29 132.5 190 41.6
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.6e-27 128.3 128 54.7
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-22 111.3 80 66.2
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 4.0e-18 97.1 130 44.6
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-12 76.6 140 37.1
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.1e-07 62.4 154 30.5
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.9e-07 61.6 194 26.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.9e-07 61.6 194 26.8
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.4e-07 61.2 194 26.3
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 2.4e-07 61.2 204 25.5
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.4e-07 61.2 193 27.5
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 3.2e-07 60.8 194 26.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 4.2e-07 60.5 194 26.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 5.4e-07 60.1 194 26.3
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 5.4e-07 60.1 194 26.3
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.4e-07 60.1 194 26.3
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 7.1e-07 59.7 190 28.4
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 9.3e-07 59.3 194 26.8
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 9.3e-07 59.3 154 29.2
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.3e-07 59.3 192 26.6
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.2e-06 58.9 193 25.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.2e-06 58.9 193 26.9
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.6e-06 58.5 234 23.9
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.6e-06 58.5 176 25.0
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 1.6e-06 58.5 187 26.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.6e-06 58.5 152 29.6
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.1e-06 58.2 193 24.9
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.1e-06 58.2 192 26.0
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.1e-06 58.2 193 26.9
Os12g0211301 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.1e-06 58.2 101 35.6
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.1e-06 58.2 152 28.9
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.1e-06 58.2 161 28.0
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 2.1e-06 58.2 196 27.0
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 2.7e-06 57.8 192 26.0
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.7e-06 57.8 192 26.0
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 3.5e-06 57.4 152 28.9
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 3.5e-06 57.4 192 25.5
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.5e-06 57.4 193 25.4
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 3.5e-06 57.4 204 26.0
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 4.6e-06 57.0 176 25.0
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 4.6e-06 57.0 187 26.2
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 6.0e-06 56.6 158 25.9
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 6.0e-06 56.6 189 27.0
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.0e-06 56.6 193 28.0
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 7.9e-06 56.2 210 27.1


User provided reference genes

Program Settings