Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-245 852.0 469 100.0
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 3.0e-183 645.6 477 76.9
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.3e-149 533.9 488 69.3
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 1.2e-139 500.7 459 66.7
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 4.1e-108 396.0 580 49.5
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 6.6e-106 388.7 564 49.3
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 3.2e-100 369.8 505 50.9
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 7.8e-99 365.2 493 50.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.7e-98 364.0 501 49.1
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 5.6e-97 359.0 551 46.8
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 2.8e-96 356.7 570 45.8
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 4.0e-95 352.8 490 51.2
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 5.2e-95 352.4 504 48.2
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.5e-94 350.9 560 46.1
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 2.0e-94 350.5 528 47.0
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 1.9e-92 344.0 557 47.8
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 2.4e-92 343.6 518 46.5
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 2.4e-92 343.6 581 44.4
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.2e-92 343.2 446 50.2
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 9.2e-92 341.7 571 45.2
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 2.7e-91 340.1 469 48.6
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 4.6e-91 339.3 517 46.2
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 6.6e-90 335.5 560 45.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 2.5e-89 333.6 489 46.8
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 2.5e-89 333.6 471 47.8
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 3.3e-89 333.2 488 47.5
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 1.2e-88 331.3 509 45.6
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 1.6e-88 330.9 517 45.5
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 2.8e-88 330.1 517 45.1
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 2.8e-88 330.1 476 47.5
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 4.7e-88 329.3 495 46.5
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 6.2e-88 328.9 485 46.4
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 6.2e-88 328.9 570 45.1
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 8.0e-88 328.6 474 47.3
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.1e-87 328.2 507 45.4
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 4.0e-87 326.2 476 46.8
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 8.9e-87 325.1 472 46.8
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 1.2e-86 324.7 505 45.0
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.0e-86 323.9 446 48.4
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 4.4e-86 322.8 492 45.7
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 9.8e-86 321.6 490 45.3
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.7e-85 320.9 583 42.5
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 8.3e-85 318.5 482 46.9
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.1e-84 318.2 290 62.8
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.4e-84 317.0 516 43.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 7.1e-84 315.5 476 45.8
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.2e-83 314.7 485 45.4
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 2.1e-83 313.9 508 44.1
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 3.5e-83 313.2 533 42.6
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 3.5e-83 313.2 556 43.2
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 4.6e-83 312.8 485 44.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 7.8e-83 312.0 522 43.5
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 1.0e-82 311.6 512 43.4
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.3e-82 310.5 566 42.0
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.3e-82 310.5 525 43.0
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 3.0e-82 310.1 481 44.9
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.1e-82 309.3 566 41.9
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 8.6e-82 308.5 510 42.4
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.1e-81 308.1 468 44.4
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 2.5e-81 307.0 349 53.3
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 2.5e-81 307.0 288 61.5
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 7.3e-81 305.4 503 43.5
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 7.3e-81 305.4 503 43.5
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 9.5e-81 305.1 481 44.3
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.6e-80 304.3 395 49.9
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.8e-80 303.5 550 42.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 3.6e-80 303.1 468 44.2
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.7e-80 302.8 511 43.1
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 6.2e-80 302.4 542 41.7
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 1.1e-79 301.6 481 43.2
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 1.1e-79 301.6 582 40.7
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.4e-79 301.2 570 41.1
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 4.0e-79 299.7 546 42.7
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 6.8e-79 298.9 415 47.5
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 8.9e-79 298.5 479 44.7
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 8.9e-79 298.5 540 40.4
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 1.2e-78 298.1 564 40.8
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 2.0e-78 297.4 527 42.5
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 2.0e-78 297.4 390 48.7
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 2.6e-78 297.0 490 43.3
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.6e-78 297.0 510 43.5
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 2.6e-78 297.0 527 42.3
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.4e-78 296.2 514 43.2
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 5.8e-78 295.8 494 41.9
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 7.6e-78 295.4 479 43.6
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 9.9e-78 295.0 480 44.0
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 9.9e-78 295.0 304 56.6
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.3e-77 294.7 468 44.7
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 1.7e-77 294.3 491 43.6
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.2e-77 293.9 470 43.8
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 2.2e-77 293.9 422 47.4
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.9e-77 293.5 483 42.2
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 2.9e-77 293.5 304 56.2
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 2.9e-77 293.5 527 41.9
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 2.9e-77 293.5 469 43.9
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 6.4e-77 292.4 375 48.8
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 6.4e-77 292.4 304 56.2
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 8.3e-77 292.0 516 42.1
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.1e-76 291.6 348 51.7
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 2.4e-76 290.4 548 40.7
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 3.2e-76 290.0 530 41.3
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 4.1e-76 289.7 302 57.0
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.1e-76 289.7 398 47.7
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 7.1e-76 288.9 530 41.3
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 7.1e-76 288.9 530 41.3
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 7.1e-76 288.9 427 46.1
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.6e-75 287.7 505 41.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.6e-75 287.7 516 41.5
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 3.5e-75 286.6 378 49.5
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.6e-75 286.2 290 57.6
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.0e-74 285.0 290 57.2
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.7e-74 284.3 292 56.5
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.7e-74 284.3 557 39.3
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 3.0e-74 283.5 368 49.5
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 3.0e-74 283.5 351 51.0
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 3.0e-74 283.5 302 54.3
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 3.9e-74 283.1 365 48.8
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 3.9e-74 283.1 480 42.9
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 8.6e-74 282.0 323 52.9
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.1e-73 281.6 517 40.4
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.5e-73 281.2 587 37.8
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.5e-73 280.4 487 42.1
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 2.5e-73 280.4 487 42.1
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 2.5e-73 280.4 531 40.7
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 3.3e-73 280.0 466 43.3
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.2e-72 278.1 288 56.9
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 2.8e-72 276.9 344 51.2
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 1.1e-71 275.0 305 54.1
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.8e-71 274.2 585 39.0
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 5.2e-71 272.7 203 71.9
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 2.0e-70 270.8 206 69.4
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 3.4e-70 270.0 486 41.8
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 9.6e-65 251.9 285 51.9
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.4e-63 248.1 312 49.4
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.4e-63 248.1 301 50.2
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 4.0e-63 246.5 301 49.8
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 6.9e-63 245.7 301 48.8
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 1.5e-62 244.6 207 67.1
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.5e-62 244.6 301 48.8
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 4.2e-60 236.5 533 36.2
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 7.1e-60 235.7 276 51.8
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 5.1e-58 229.6 402 42.3
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 2.7e-51 207.2 207 56.5
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.1e-49 201.8 158 70.9
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.5e-49 201.4 312 45.2
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 4.3e-49 199.9 328 44.5
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.8e-48 197.2 483 36.9
vmacro07110 Vaccinium macrocarpon HOM05D003093 ORTHO05D004301 3.2e-44 183.7 467 34.0
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 2.7e-43 180.6 139 69.1
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 2.3e-42 177.6 138 71.0
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 6.7e-42 176.0 138 65.9
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.8e-39 167.9 148 60.8
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 6.5e-37 159.5 162 56.2
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 6.7e-34 149.4 130 64.6
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 6.7e-34 149.4 122 63.1
FvH4_2g04410 Fragaria vesca HOM05D003093 ORTHO05D004301 5.3e-31 139.8 314 37.6
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 5.9e-30 136.3 124 56.5
Hund22429 Selenicereus undatus HOM05D003093 ORTHO05D004301 5.9e-30 136.3 396 34.1
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 2.9e-29 134.0 165 49.7
Oeu009484.1 Olea europaea HOM05D003093 ORTHO05D004301 1.2e-27 128.6 348 33.9
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 4.3e-25 120.2 140 52.9
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 4.3e-25 120.2 161 45.3
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 4.3e-25 120.2 161 45.3
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 4.3e-25 120.2 161 45.3
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 7.4e-25 119.4 188 42.6
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.1e-23 115.5 107 61.7
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 5.3e-23 113.2 162 45.1
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 9.1e-23 112.5 63 88.9
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 6.5e-21 106.3 363 29.5
Nitab4.5_0012104g0020 Nicotiana tabacum HOM05D003093 ORTHO05D004301 3.6e-19 100.5 79 65.8
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 3.7e-16 90.5 76 65.8
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 6.3e-16 89.7 173 37.0
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-15 86.7 48 89.6
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.3e-15 86.7 48 89.6
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 7.7e-14 82.8 48 83.3
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 3.8e-13 80.5 165 34.5
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 6.5e-13 79.7 100 45.0
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 3.2e-12 77.4 45 84.4
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 9.4e-12 75.9 59 69.5
Atru.chr12.587 Acer truncatum HOM05D003093 ORTHO05D023197 1.4e-10 72.0 93 52.7
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 1.4e-10 72.0 49 75.5
Oeu009483.1 Olea europaea HOM05D003093 ORTHO05D004301 1.7e-08 65.1 80 52.5
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 1.7e-08 65.1 73 58.9
Psat6g163840 Pisum sativum HOM05D003093 ORTHO05D004301 3.7e-08 63.9 125 38.4
Atru.chr12.589 Acer truncatum HOM05D003093 ORTHO05D015210 8.2e-08 62.8 72 50.0
Atru.chr12.588 Acer truncatum HOM05D003093 ORTHO05D004301 1.8e-07 61.6 119 38.7
MELO3C030596.2 Cucumis melo HOM05D003093 ORTHO05D023197 7.0e-07 59.7 64 59.4


User provided reference genes

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