Gene: Nitab4.5_0022203g0010

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0022203g0010
  • Transcript Identifier Nitab4.5_0022203g0010.1
  • Gene Type Coding gene
  • Location Nitab4.5_0022203 : 69-2260 : positive

Gene Family Information

  • ID HOM05D003093
  • #Genes/#Species 222/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0022203g0010.1
  • SR1-identifier Nta09g21450.1

Descriptions

  • Description Pre-mRNA-splicing factor 3, Domain of unknown function DUF1115, U4/U6 small nuclear ribonucleoprotein Prp3
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0044030
ISO
PLAZA Integrative Orthologyregulation of DNA methylation AT1G28060
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G28060
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G28060

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT1G28060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027104 U4/U6 small nuclear ribonucleoprotein Prp3
IPR010541 Domain of unknown function DUF1115
IPR013881 Pre-mRNA-splicing factor 3
Mapman id Description
16.2.1.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)
16.2.1.5.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)