Gene: AT3G55930

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55930
  • Transcript Identifier AT3G55930.1
  • Gene Type Coding gene
  • Location Chr3 : 20745382-20746194 : negative

Gene Family Information

  • ID HOM05D003093
  • #Genes/#Species 222/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55930.1
  • uniprot Q1PEF1

Descriptions

  • Description pre-mRNA-splicing factor
  • Computational description Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT1G28060.1); Has 549 Blast hits to 518 proteins in 205 species: Archae - 0; Bacteria - 10; Metazoa - 155; Fungi - 156; Plants - 71; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0046540
IEA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0046540
IEA
InterProU4/U6 x U5 tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010541 Domain of unknown function DUF1115
IPR027104 U4/U6 small nuclear ribonucleoprotein Prp3
IPR013881 Pre-mRNA-splicing factor 3
Mapman id Description
16.2.1.3.1 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)
16.2.1.5.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)