Gene: Duzib114G0430

General Information

Structural Information

Species Durio zibethinus
Gene Identifier Duzib114G0430
Transcript Identifier Duzib114G0430.01
Gene Type Coding gene
Location NW_019167926.1 : 7682964-7687049 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003093
#Genes/#Species 222/98
Phylogenetic origin

ID ORTHO05D004301
#Genes/#Species 184/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate
Block Duplication Block duplicate

Labels

Identifiers

name LOC111310254
name XM_022909518.1
pid XP_022765253.1
id gene-LOC111310254
uniprot A0A6P6AK93

Descriptions

Short descriptions
Ortholog descriptions

product protein RDM16-like, transcript variant X1

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	GOA Database	mRNA splicing, via spliceosome
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome
GO:0006397	IEA	GOA Database	mRNA processing
GO:0008380	IEA	GOA Database	RNA splicing
GO:0044030	ISO	PLAZA Integrative Orthology	regulation of DNA methylation	AT1G28060
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT1G28060

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046540	IEA	GOA Database	U4/U6 x U5 tri-snRNP complex
GO:0046540	IEA	InterPro	U4/U6 x U5 tri-snRNP complex
GO:0005634	IEA	GOA Database	nucleus
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT1G28060

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR010541	Domain of unknown function DUF1115
IPR013881	Pre-mRNA-splicing factor 3
IPR027104	U4/U6 small nuclear ribonucleoprotein Prp3

Mapman id	Description
16.2.1.3.1	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)
16.2.1.5.3	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)