Gene: CiPaw.02G178700

General Information

Structural Information

Species Carya illinoinensis
Gene Identifier CiPaw.02G178700
Transcript Identifier CiPaw.02G178700.1
Gene Type Coding gene
Location Chr02 : 35429377-35431646 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D003093
#Genes/#Species 222/98
Phylogenetic origin

ID ORTHO05D004301
#Genes/#Species 184/97
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id CiPaw.02G178700.v1.1
pacid 45846499

Descriptions

Short descriptions
Ortholog descriptions

Description KOG2769 - Putative u4/u6 small nuclear ribonucleoprotein

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000398	IEA	InterPro	mRNA splicing, via spliceosome
GO:0044030	ISO	PLAZA Integrative Orthology	regulation of DNA methylation	AT1G28060
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT1G28060
GO:0006397	ISO	PLAZA Integrative Orthology	mRNA processing	AT1G28060

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0046540	IEA	InterPro	U4/U6 x U5 tri-snRNP complex
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT1G28060

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR027104	U4/U6 small nuclear ribonucleoprotein Prp3
IPR010541	Domain of unknown function DUF1115
IPR013881	Pre-mRNA-splicing factor 3

Mapman id	Description
16.2.1.3.1	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)
16.2.1.5.3	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3)