Gene: Haze_16975
General Information
Structural Information
- Species Corylus avellana
- Gene Identifier Haze_16975
- Transcript Identifier Haze_16975-RA
- Gene Type Coding gene
- Location 11 : 27531882-27542451 : negative
Gene Family Information
- ID HOM05D003093
- #Genes/#Species 222/98
- Phylogenetic origin
- ID ORTHO05D004301
- #Genes/#Species 184/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Haze_16975-RA
Descriptions
- Description Similar to RDM16: Protein RDM16 (Arabidopsis thaliana OX=3702)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006468 | IEA | InterPro | protein phosphorylation | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0044030 | ISO | PLAZA Integrative Orthology | regulation of DNA methylation | AT1G28060 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT1G28060 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT1G28060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016872 | IEA | InterPro | intramolecular lyase activity | |
| GO:0004672 | IEA | InterPro | protein kinase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046540 | IEA | InterPro | U4/U6 x U5 tri-snRNP complex | |
| GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT1G28060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR016087 | Chalcone isomerase |
| IPR016088 | Chalcone isomerase, 3-layer sandwich |
| IPR011009 | Protein kinase-like domain superfamily |
| IPR016089 | Chalcone isomerase, orthogonal bundle domain superfamily |
| IPR013881 | Pre-mRNA-splicing factor 3 |
| IPR036298 | Chalcone isomerase superfamily |
| IPR010541 | Domain of unknown function DUF1115 |
| IPR001245 | Serine-threonine/tyrosine-protein kinase, catalytic domain |
| IPR027104 | U4/U6 small nuclear ribonucleoprotein Prp3 |
| Mapman id | Description |
|---|---|
| 16.2.1.3.1 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3) |
| 16.2.1.5.3 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF3) |
| 9.2.2.3.1 | Secondary metabolism.phenolics.flavonoid biosynthesis.flavanones.chalcone isomerase |