Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36755 Trifolium pratense HOM05D001934 ORTHO05D002139 1.2e-42 176.0 87 100.0
TPR.G36794 Trifolium pratense HOM05D001934 ORTHO05D002139 6.8e-17 90.5 104 51.0
Medtr4g057345 Medicago truncatula HOM05D001934 ORTHO05D002139 1.2e-16 89.7 104 51.0
Ca_19318_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 2.9e-15 85.1 104 49.0
Medtr4g057340 Medicago truncatula HOM05D001934 ORTHO05D002139 3.8e-15 84.7 104 48.1
Lalb_Chr19g0136941 Lupinus albus HOM05D001934 ORTHO05D002139 4.9e-15 84.3 104 49.0
Glyma.12G080900 Glycine max HOM05D001934 ORTHO05D002139 1.1e-14 83.2 104 48.1
Psat7g191720 Pisum sativum HOM05D001934 ORTHO05D002139 2.4e-14 82.0 104 47.1
Duzib150G0588 Durio zibethinus HOM05D001934 ORTHO05D002139 5.4e-14 80.9 104 47.1
Glyma.11G193150 Glycine max HOM05D001934 ORTHO05D002139 5.4e-14 80.9 104 47.1
Gohir.A03G029300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 7.1e-14 80.5 104 47.1
Gohir.D03G139300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 7.1e-14 80.5 104 47.1
Gorai.003G146000 Gossypium raimondii HOM05D001934 ORTHO05D002139 7.1e-14 80.5 104 47.1
unitig_22.g5652 Utricularia gibba HOM05D001934 ORTHO05D002139 1.2e-13 79.7 104 47.1
Manes.11G152000 Manihot esculenta HOM05D001934 ORTHO05D002139 1.6e-13 79.3 104 46.2
Thecc.09G350700 Theobroma cacao HOM05D001934 ORTHO05D002139 1.6e-13 79.3 104 46.2
Cfa010294 Carpinus fangiana HOM05D001934 ORTHO05D002139 2.1e-13 79.0 104 47.1
PGR119G0273 Punica granatum HOM05D001934 ORTHO05D002139 2.1e-13 79.0 104 46.2
Oeu040437.1 Olea europaea HOM05D001934 ORTHO05D002139 2.7e-13 78.6 106 45.3
Solyc11g066370.2 Solanum lycopersicum HOM05D001934 ORTHO05D002139 2.7e-13 78.6 104 46.2
Sopen11g026120 Solanum pennellii HOM05D001934 ORTHO05D002139 2.7e-13 78.6 104 46.2
Oeu007739.1 Olea europaea HOM05D001934 ORTHO05D002139 4.6e-13 77.8 104 46.2
CSS0030578 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 6.0e-13 77.4 104 46.2
CSS0042491 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 6.0e-13 77.4 104 46.2
Actinidia07183 Actinidia chinensis HOM05D001934 ORTHO05D002139 7.8e-13 77.0 81 54.3
ClCG02G021550 Citrullus lanatus HOM05D001934 ORTHO05D002139 7.8e-13 77.0 104 45.2
Ciclev10027871m.g Citrus clementina HOM05D001934 ORTHO05D002139 7.8e-13 77.0 104 44.2
Cc01_g04650 Coffea canephora HOM05D001934 ORTHO05D002139 7.8e-13 77.0 104 46.2
Cc01_g10340 Coffea canephora HOM05D001934 ORTHO05D002139 7.8e-13 77.0 104 46.2
Haze_23710 Corylus avellana HOM05D001934 ORTHO05D002139 7.8e-13 77.0 104 46.2
COL.COLO4_11104 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.0e-12 76.6 104 45.2
Eucgr.J00386 Eucalyptus grandis HOM05D001934 ORTHO05D002139 1.0e-12 76.6 104 46.2
Lsat_1_v5_gn_1_64561 Lactuca sativa HOM05D001934 ORTHO05D002139 1.0e-12 76.6 104 44.2
SGA_v2.0_scaffold442G51676 Striga asiatica HOM05D001934 ORTHO05D002139 1.0e-12 76.6 104 47.1
CAN.G546.43 Capsicum annuum HOM05D001934 ORTHO05D002139 1.3e-12 76.3 104 46.2
Atru.chr3.3525 Acer truncatum HOM05D001934 ORTHO05D002139 1.7e-12 75.9 104 45.2
TPR.G10299 Trifolium pratense HOM05D001934 ORTHO05D002139 1.7e-12 75.9 52 78.8
vmacro03256 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 1.7e-12 75.9 107 45.8
MSTRG.17761 Avicennia marina HOM05D001934 ORTHO05D002139 2.3e-12 75.5 104 46.2
Potri.009G005900 Populus trichocarpa HOM05D001934 ORTHO05D002139 2.3e-12 75.5 104 43.3
Prupe.6G112300 Prunus persica HOM05D001934 ORTHO05D002139 2.3e-12 75.5 104 45.2
HPP92_022613 Vanilla planifolia HOM05D001934 ORTHO05D002139 2.3e-12 75.5 68 57.4
DCAR_018768 Daucus carota HOM05D001934 ORTHO05D002139 3.0e-12 75.1 104 45.2
HanXRQChr11g0345941 Helianthus annuus HOM05D001934 ORTHO05D002139 3.0e-12 75.1 104 44.2
SEGI_21231 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 3.0e-12 75.1 104 44.2
VMungo1127G0172 Vigna mungo HOM05D001934 ORTHO05D002139 3.0e-12 75.1 104 44.2
Cpa.g.sc1.10 Carica papaya HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 44.2
CiPaw.13G123200 Carya illinoinensis HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 45.2
Migut.N02546 Erythranthe guttata HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 47.1
FAN11G3348 Fragaria x ananassa HOM05D001934 ORTHO05D002139 3.9e-12 74.7 82 52.4
FAN16G0005 Fragaria x ananassa HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 45.2
Lj2A1009G37 Lonicera japonica HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 45.2
Sc06g0010820 Simmondsia chinensis HOM05D001934 ORTHO05D002139 3.9e-12 74.7 104 44.2
EL10Ac9g22613 Beta vulgaris HOM05D001934 ORTHO05D002139 5.1e-12 74.3 104 44.2
MELO3C026949.2 Cucumis melo HOM05D001934 ORTHO05D002139 5.1e-12 74.3 104 44.2
CsaV3_6G014300 Cucumis sativus L. HOM05D001934 ORTHO05D002139 5.1e-12 74.3 104 44.2
Dinv29375 Davidia involucrata HOM05D001934 ORTHO05D002139 5.1e-12 74.3 104 44.2
Hund08363 Selenicereus undatus HOM05D001934 ORTHO05D002139 5.1e-12 74.3 104 47.1
FAN11G3232 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.6e-12 73.9 104 45.2
Sed0019273 Sechium edule HOM05D001934 ORTHO05D002139 6.6e-12 73.9 103 44.7
Aqoxy1G01108 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 8.7e-12 73.6 103 43.7
Lj3g0025418 Lotus japonicus HOM05D001934 ORTHO05D002139 8.7e-12 73.6 104 44.2
Peaxi162Scf01492g00010 Petunia axillaris HOM05D001934 ORTHO05D002139 8.7e-12 73.6 105 45.7
FvH4_3g30740 Fragaria vesca HOM05D001934 ORTHO05D002139 1.1e-11 73.2 104 45.2
Nitab4.5_0004414g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 1.1e-11 73.2 104 45.2
ECA248G1944 Erigeron canadensis HOM05D001934 ORTHO05D002139 1.5e-11 72.8 104 42.3
Hma1.2p1_0779F.1_g216700 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 1.5e-11 72.8 104 43.3
GSVIVG01031470001 Vitis vinifera HOM05D001934 ORTHO05D002139 1.5e-11 72.8 104 44.2
QL01p015243 Quercus lobata HOM05D001934 ORTHO05D002139 1.9e-11 72.4 104 43.3
BcaC07g41965 Brassica carinata HOM05D001934 ORTHO05D002139 2.5e-11 72.0 103 42.7
C08p50170 Brassica napus HOM05D001934 ORTHO05D002139 2.5e-11 72.0 103 42.7
BolC8t52546H Brassica oleracea HOM05D001934 ORTHO05D002139 2.5e-11 72.0 103 42.7
CBR_g45434 Chara braunii HOM05D001934 ORTHO05D002139 2.5e-11 72.0 104 40.4
AUR62029176 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.5e-11 72.0 104 44.2
RcHm_v2.0_Chr5g0056931 Rosa chinensis HOM05D001934 ORTHO05D002139 2.5e-11 72.0 104 44.2
CDE08G0024 Ceratophyllum demersum HOM05D001934 ORTHO05D002139 3.3e-11 71.6 104 43.3
AUR62014959 Chenopodium quinoa HOM05D001934 ORTHO05D002139 3.3e-11 71.6 105 43.8
Migut.D00893 Erythranthe guttata HOM05D001934 ORTHO05D002139 3.3e-11 71.6 104 45.2
MD03G1127000 Malus domestica HOM05D001934 ORTHO05D002139 3.3e-11 71.6 104 44.2
A09p66010 Brassica napus HOM05D001934 ORTHO05D002139 4.3e-11 71.2 103 41.7
BraA09t41940Z Brassica rapa HOM05D001934 ORTHO05D002139 4.3e-11 71.2 103 41.7
PSO339G0390 Papaver somniferum HOM05D001934 ORTHO05D002139 4.3e-11 71.2 107 42.1
SalBow3G0225 Salvia bowleyana HOM05D001934 ORTHO05D002139 4.3e-11 71.2 104 44.2
TAR636G2490 Trochodendron aralioides HOM05D001934 ORTHO05D002139 4.3e-11 71.2 91 48.4
arahy.Tifrunner.gnm1.ann1.489L6Z Arachis hypogaea HOM05D001934 ORTHO05D002139 5.6e-11 70.9 104 42.3
arahy.Tifrunner.gnm1.ann1.CF9NWX Arachis hypogaea HOM05D001934 ORTHO05D002139 5.6e-11 70.9 104 42.3
FvH4_3g30730 Fragaria vesca HOM05D001934 ORTHO05D002139 5.6e-11 70.9 104 44.2
Rhsim13G0100300 Rhododendron simsii HOM05D001934 ORTHO05D002139 7.3e-11 70.5 107 43.0
Ah.01g003310 Amaranthus hybridus HOM05D001934 ORTHO05D002139 1.6e-10 69.3 104 42.3
Thhalv10006843m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 1.6e-10 69.3 103 41.7
MD11G1147600 Malus domestica HOM05D001934 ORTHO05D002139 1.6e-10 69.3 104 43.3
Nn6g35237 Nelumbo nucifera HOM05D001934 ORTHO05D002139 1.6e-10 69.3 104 42.3
ATR0329G039 Amborella trichopoda HOM05D001934 ORTHO05D002139 2.1e-10 68.9 104 42.3
BcaB07g34055 Brassica carinata HOM05D001934 ORTHO05D002139 2.1e-10 68.9 103 41.7
A06p05190 Brassica napus HOM05D001934 ORTHO05D002139 2.1e-10 68.9 103 41.7
C05p06240 Brassica napus HOM05D001934 ORTHO05D002139 2.1e-10 68.9 103 41.7
BraA06t23726Z Brassica rapa HOM05D001934 ORTHO05D002139 2.1e-10 68.9 103 41.7
HanXRQChr01g0019601 Helianthus annuus HOM05D001934 ORTHO05D002139 2.1e-10 68.9 104 41.3
SMO134G0141 Selaginella moellendorffii HOM05D001934 ORTHO05D002139 2.1e-10 68.9 104 40.4
TPR.G3233 Trifolium pratense HOM05D001934 ORTHO05D002139 2.1e-10 68.9 34 88.2
vmacro17296 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 2.1e-10 68.9 102 43.1
ATR0749G104 Amborella trichopoda HOM05D001934 ORTHO05D002139 2.8e-10 68.6 105 41.9
FAN21G1990 Fragaria x ananassa HOM05D001934 ORTHO05D002139 3.6e-10 68.2 107 41.1
Sp1g06770 Schrenkiella parvula HOM05D001934 ORTHO05D002139 3.6e-10 68.2 103 41.7
arahy.Tifrunner.gnm1.ann1.Z70S0B Arachis hypogaea HOM05D001934 ORTHO05D002139 4.8e-10 67.8 104 40.4
Mapoly0033s0129 Marchantia polymorpha HOM05D001934 ORTHO05D002139 4.8e-10 67.8 102 40.2
Peaxi162Scf00420g00341 Petunia axillaris HOM05D001934 ORTHO05D002139 4.8e-10 67.8 104 43.3
TAR625G1443 Trochodendron aralioides HOM05D001934 ORTHO05D002139 4.8e-10 67.8 104 42.3
Aqoxy1G02004 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 6.2e-10 67.4 102 42.2
arahy.Tifrunner.gnm1.ann1.E6T32I Arachis hypogaea HOM05D001934 ORTHO05D002139 6.2e-10 67.4 104 39.4
Nitab4.5_0000329g0050 Nicotiana tabacum HOM05D001934 ORTHO05D002139 6.2e-10 67.4 100 43.0
Pp3c13_20200 Physcomitrium patens HOM05D001934 ORTHO05D002139 6.2e-10 67.4 105 39.0
Pp3c13_20209 Physcomitrium patens HOM05D001934 ORTHO05D002139 6.2e-10 67.4 105 39.0
AagrBONN_evm.TU.Sc2ySwM_362.157 Anthoceros agrestis HOM05D001934 ORTHO05D002139 1.1e-09 66.6 103 40.8
AL1G18510 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 1.1e-09 66.6 103 39.8
Carub.0001s0748 Capsella rubella HOM05D001934 ORTHO05D002139 1.1e-09 66.6 103 39.8
BcaC05g24731 Brassica carinata HOM05D001934 ORTHO05D002139 1.4e-09 66.2 103 40.8
BolC5t29379H Brassica oleracea HOM05D001934 ORTHO05D002139 1.4e-09 66.2 103 40.8
Phvul.011G085900 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 1.4e-09 66.2 34 85.3
AT1G08130 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 1.8e-09 65.9 103 39.8
Peaxi162Scf00420g00330 Petunia axillaris HOM05D001934 ORTHO05D002139 1.8e-09 65.9 104 42.3
TWI75G1147 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 1.8e-09 65.9 104 41.3
SHI06224 Sapria himalayana HOM05D001934 ORTHO05D002139 3.1e-09 65.1 104 40.4
AL1G56130 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 5.3e-09 64.3 103 39.8
HPP92_022658 Vanilla planifolia HOM05D001934 ORTHO05D002139 3.4e-08 61.6 34 79.4
Dinv16217 Davidia involucrata HOM05D001934 ORTHO05D002139 4.4e-08 61.2 33 81.8
Hund12958 Selenicereus undatus HOM05D001934 ORTHO05D002139 5.8e-08 60.8 121 38.8
Aa31sc759G20 Aethionema arabicum HOM05D001934 ORTHO05D002139 7.6e-08 60.5 39 69.2
AT1G49250 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 7.6e-08 60.5 103 37.9
CANSAT54G0170 Cannabis sativa HOM05D001934 ORTHO05D002139 9.9e-08 60.1 33 72.7
Os10g0489200 Oryza sativa ssp. japonica HOM05D001934 ORTHO05D002139 9.9e-08 60.1 34 76.5
Zm00001eb045200 Zea mays HOM05D001934 ORTHO05D002139 9.9e-08 60.1 34 76.5
arahy.Tifrunner.gnm1.ann1.2B3BHY Arachis hypogaea HOM05D003411 ORTHO05D003914 1.7e-07 59.3 34 73.5
CARHR260680 Cardamine hirsuta HOM05D001934 ORTHO05D002139 2.2e-07 58.9 101 40.6
CARHR007940 Cardamine hirsuta HOM05D001934 ORTHO05D002139 3.8e-07 58.2 33 75.8
AagrBONN_evm.TU.Sc2ySwM_368.3079 Anthoceros agrestis HOM05D001934 ORTHO05D002139 6.4e-07 57.4 33 72.7
PRCOL_00004276 Prasinoderma coloniale HOM05D001934 ORTHO05D002139 6.4e-07 57.4 105 35.2
SEGI_07552 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 4.2e-06 54.7 37 70.3
Cre07.g325716 Chlamydomonas reinhardtii HOM05D001934 ORTHO05D002139 7.1e-06 53.9 102 37.3


User provided reference genes

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