Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 1.3e-76 290.0 191 100.0
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 2.0e-61 239.6 221 75.1
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 1.6e-58 229.9 180 90.0
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 1.7e-52 209.9 186 64.0
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 3.0e-49 199.1 188 73.9
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 8.2e-47 191.0 177 79.7
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 7.6e-45 184.5 189 69.3
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 3.8e-44 182.2 184 72.8
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 3.2e-43 179.1 168 76.2
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 7.2e-43 177.9 196 71.4
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 6.1e-42 174.9 193 70.5
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 7.9e-42 174.5 192 68.2
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 1.3e-41 173.7 186 68.8
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 1.8e-41 173.3 182 70.9
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.3e-41 172.9 179 71.5
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 5.1e-41 171.8 127 73.2
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.9e-40 169.9 181 71.8
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 9.7e-40 167.5 185 70.8
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 9.7e-40 167.5 190 66.8
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 1.3e-39 167.2 181 71.3
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 6.3e-39 164.9 189 67.7
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 1.8e-38 163.3 193 67.4
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 1.2e-37 160.6 179 73.7
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 3.4e-37 159.1 193 67.9
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 4.5e-37 158.7 177 69.5
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 6.5e-36 154.8 201 65.7
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 1.4e-35 153.7 179 64.8
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.5e-35 152.9 192 61.5
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 7.2e-35 151.4 193 64.8
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 9.4e-35 151.0 180 69.4
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 9.4e-35 151.0 180 69.4
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 9.4e-35 151.0 183 67.8
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 2.1e-34 149.8 192 65.1
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 2.1e-34 149.8 178 65.2
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 3.6e-34 149.1 185 66.5
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 4.6e-34 148.7 181 65.2
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 6.1e-34 148.3 188 66.0
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 7.9e-34 147.9 184 67.4
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 1.0e-33 147.5 177 66.1
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 1.0e-33 147.5 181 65.2
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 3.0e-33 146.0 190 66.3
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 8.8e-33 144.4 191 59.2
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.5e-32 143.7 182 65.9
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 1.5e-32 143.7 195 62.6
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.0e-32 143.3 193 61.1
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 3.3e-32 142.5 195 60.5
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 3.3e-32 142.5 196 60.2
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 4.4e-32 142.1 184 64.7
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 5.7e-32 141.7 196 59.7
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 7.4e-32 141.4 187 64.2
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 1.3e-31 140.6 178 59.0
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.7e-31 140.2 199 62.3
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 4.1e-30 135.6 115 65.2
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 4.1e-30 135.6 183 62.3
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 4.1e-30 135.6 182 57.7
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 1.2e-29 134.0 181 61.3
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 2.0e-29 133.3 191 59.2
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 4.5e-29 132.1 188 59.6
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 7.7e-29 131.3 193 62.7
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 7.7e-29 131.3 176 58.0
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 7.7e-29 131.3 176 58.0
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 1.3e-28 130.6 181 61.9
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 1.3e-28 130.6 181 61.9
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 1.3e-28 130.6 190 48.9
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 6.5e-28 128.3 182 57.1
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 8.5e-28 127.9 186 61.8
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 1.1e-27 127.5 192 59.9
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 2.5e-27 126.3 187 51.3
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 2.5e-27 126.3 179 60.9
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 7.2e-27 124.8 178 63.5
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 1.6e-26 123.6 182 59.9
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 3.6e-26 122.5 182 59.3
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 3.0e-25 119.4 197 57.4
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 8.8e-25 117.9 187 56.1
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 2.0e-24 116.7 199 41.2
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 2.6e-24 116.3 115 60.0
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 4.4e-24 115.5 191 55.5
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 4.8e-23 112.1 201 53.2
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 8.2e-23 111.3 198 50.0
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 2.4e-22 109.8 200 55.5
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 3.1e-22 109.4 176 58.0
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 4.1e-22 109.0 177 62.1
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 7.0e-22 108.2 183 60.1
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 1.2e-21 107.5 185 57.8
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 2.0e-21 106.7 118 57.6
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 2.0e-21 106.7 183 59.6
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 2.6e-21 106.3 182 59.9
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 7.7e-21 104.8 183 59.0
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 2.2e-20 103.2 127 63.0
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 2.9e-20 102.8 179 58.1
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 8.5e-20 101.3 196 38.8
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 1.1e-19 100.9 174 52.3
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 1.1e-19 100.9 174 52.3
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 2.5e-19 99.8 124 54.8
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 4.2e-19 99.0 173 57.2
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 9.4e-19 97.8 174 51.7
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 9.4e-19 97.8 118 50.8
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 1.6e-18 97.1 117 56.4
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 2.1e-18 96.7 178 53.9
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 8.0e-18 94.7 145 44.8
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 8.0e-18 94.7 199 51.8
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 3.0e-17 92.8 124 50.8
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 8.8e-17 91.3 198 48.5
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 8.8e-17 91.3 209 51.7
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 2.0e-16 90.1 186 47.8
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 2.0e-16 90.1 124 49.2
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 4.4e-16 89.0 143 42.7
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 4.4e-16 89.0 121 47.9
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 2.8e-15 86.3 119 46.2
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 5.3e-14 82.0 102 54.9
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 7.0e-14 81.6 94 63.8
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 3.5e-13 79.3 121 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 4.2e-11 72.4 152 36.8
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 1.2e-10 70.9 253 40.3
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 1.5e-08 63.9 58 62.1
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 1.4e-06 57.4 59 55.9
Nitab4.5_0004596g0040 Nicotiana tabacum HOM05D005565 ORTHO05D006950 9.1e-06 54.7 58 56.9


User provided reference genes

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