Gene: Potri.001G372600

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.001G372600
Transcript Identifier Potri.001G372600.1
Gene Type Coding gene
Location Chr01 : 39047572-39050153 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D005565
#Genes/#Species 138/95
Phylogenetic origin

ID ORTHO05D006950
#Genes/#Species 136/95
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Potri.001G372600.v4.1
pacid 42790036
synonym fgenesh4_pm.C_LG_I001181

Descriptions

Short descriptions
Ortholog descriptions

Description K12840 - splicing factor 45 (RBM17, SPF45)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0045292	IEA	InterPro	mRNA cis splicing, via spliceosome
GO:0006281	ISO	PLAZA Integrative Orthology	DNA repair	AT1G30480
GO:0043484	ISO	PLAZA Integrative Orthology	regulation of RNA splicing	AT1G30480

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G30480
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT1G30480

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR035979	RNA-binding domain superfamily
IPR000467	G-patch domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR040052	Splicing factor 45
IPR003954	RNA recognition motif domain, eukaryote
IPR034653	SPF45, RNA recognition motif

Mapman id	Description
16.2.1.2.8	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SFPS/DRT111)