Gene: Sopen02g018950

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g018950
  • Transcript Identifier Sopen02g018950.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 42902842-42906632 : positive

Gene Family Information

  • ID HOM05D005565
  • #Genes/#Species 138/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g018950.1

Descriptions

  • Description recombination and DNA-damage resistance protein (DRT111) | DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111 (DRT111) | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: DNA repair | LOCATED IN: chloroplast, nucleus, cytoplasm | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , D111/G-patch , Splicing factor, SPF45
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045292
IEA
InterPromRNA cis splicing, via spliceosome
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G30480
GO:0043484
ISO
PLAZA Integrative Orthologyregulation of RNA splicing AT1G30480

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G30480
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G30480

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034653 SPF45, RNA recognition motif
IPR040052 Splicing factor 45
IPR000467 G-patch domain
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.1.2.8 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SFPS/DRT111)