Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29016 Trifolium pratense HOM05D004988 ORTHO05D005845 5.7e-77 290.8 143 100.0
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 8.2e-68 260.4 136 94.1
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 4.2e-64 248.1 136 90.4
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 2.7e-63 245.4 136 89.7
Lalb_Chr04g0248341 Lupinus albus HOM05D004988 ORTHO05D005845 4.4e-61 238.0 136 85.3
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 1.7e-60 236.1 136 83.1
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 6.3e-60 234.2 136 83.1
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 6.3e-60 234.2 136 83.1
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 1.1e-59 233.4 136 84.6
Phvul.008G268900 Phaseolus vulgaris HOM05D004988 ORTHO05D005845 2.2e-57 225.7 136 80.9
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 1.1e-56 223.4 136 80.1
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 1.0e-54 216.9 142 76.8
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 8.8e-54 213.8 142 75.4
Atru.chr1.2791 Acer truncatum HOM05D004988 ORTHO05D005845 2.0e-53 212.6 136 75.7
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 4.4e-53 211.5 142 76.1
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 5.7e-53 211.1 142 74.6
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 9.7e-53 210.3 142 73.9
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 1.3e-52 209.9 142 74.6
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 2.8e-52 208.8 142 74.6
Dinv40770 Davidia involucrata HOM05D004988 ORTHO05D005845 2.8e-52 208.8 136 75.7
Prupe.4G216500 Prunus persica HOM05D004988 ORTHO05D005845 2.8e-52 208.8 142 74.6
QL08p009463 Quercus lobata HOM05D004988 ORTHO05D005845 3.7e-52 208.4 142 73.9
FAN16G3602 Fragaria x ananassa HOM05D004988 ORTHO05D005845 8.2e-52 207.2 142 73.9
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 1.1e-51 206.8 142 73.2
TAR626G1959 Trochodendron aralioides HOM05D004988 ORTHO05D005845 1.4e-51 206.5 140 72.1
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 4.1e-51 204.9 134 74.6
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 7.0e-51 204.1 142 73.2
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 9.1e-51 203.8 142 71.8
FAN25G2375 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.2e-50 203.4 142 73.9
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 2.0e-50 202.6 134 73.1
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 2.7e-50 202.2 142 71.8
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 2.7e-50 202.2 142 71.1
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 3.5e-50 201.8 142 71.8
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 3.5e-50 201.8 134 73.9
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 5.9e-50 201.1 142 71.8
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 1.3e-49 199.9 134 75.4
Actinidia35358 Actinidia chinensis HOM05D004988 ORTHO05D005845 2.2e-49 199.1 142 71.8
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 6.5e-49 197.6 134 74.6
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 1.5e-48 196.4 134 71.6
MSTRG.6932 Avicennia marina HOM05D004988 ORTHO05D005845 1.9e-48 196.1 134 71.6
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 3.2e-48 195.3 134 70.9
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 4.2e-48 194.9 134 70.9
Hma1.2p1_0036F.1_g023490 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 4.2e-48 194.9 142 71.1
Hma1.2p1_0036F.1_g023500 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 4.2e-48 194.9 142 71.1
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 4.2e-48 194.9 134 70.9
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 4.2e-48 194.9 142 71.8
HanXRQChr03g0079801 Helianthus annuus HOM05D004988 ORTHO05D005845 5.5e-48 194.5 142 69.7
HanXRQChr05g0152621 Helianthus annuus HOM05D004988 ORTHO05D005845 9.4e-48 193.7 142 69.7
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 1.2e-47 193.4 134 67.9
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 1.6e-47 193.0 142 69.7
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 1.6e-47 193.0 134 70.1
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 2.1e-47 192.6 142 68.3
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 2.7e-47 192.2 136 67.6
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 2.7e-47 192.2 142 69.0
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 3.6e-47 191.8 134 70.1
AT3G20475 Arabidopsis thaliana HOM05D004988 ORTHO05D005845 4.7e-47 191.4 134 70.1
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 6.1e-47 191.0 142 70.4
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 6.1e-47 191.0 142 69.0
CANSAT11G0463 Cannabis sativa HOM05D004988 ORTHO05D005845 1.0e-46 190.3 134 68.7
BcaNung06350 Brassica carinata HOM05D004988 ORTHO05D005845 2.3e-46 189.1 134 69.4
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 3.0e-46 188.7 134 68.7
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 3.0e-46 188.7 134 68.7
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 4.0e-46 188.3 134 68.7
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 5.2e-46 188.0 134 67.9
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 6.8e-46 187.6 134 72.4
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 8.8e-46 187.2 142 68.3
Nitab4.5_0000882g0070 Nicotiana tabacum HOM05D004988 ORTHO05D005845 8.8e-46 187.2 134 68.7
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 8.8e-46 187.2 134 72.4
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 1.5e-45 186.4 134 69.4
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 2.0e-45 186.0 142 68.3
Peaxi162Scf00350g00216 Petunia axillaris HOM05D004988 ORTHO05D005845 2.6e-45 185.7 134 68.7
MBI18_g26501_MAGBIO Magnolia biondii HOM05D004988 ORTHO05D005845 3.4e-45 185.3 136 65.4
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 4.4e-45 184.9 142 66.9
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 4.4e-45 184.9 142 67.6
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 5.7e-45 184.5 136 67.6
unitig_578.g15992 Utricularia gibba HOM05D004988 ORTHO05D005845 5.7e-45 184.5 134 67.2
CSS0047944 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 9.8e-45 183.7 130 69.2
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 9.8e-45 183.7 134 67.9
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 1.3e-44 183.3 134 67.2
Solyc10g018530.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 8.3e-44 180.6 134 66.4
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 2.4e-43 179.1 124 71.0
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 2.4e-43 179.1 136 66.2
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 1.6e-42 176.4 142 64.1
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 5.9e-42 174.5 142 65.5
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 6.5e-41 171.0 172 57.0
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 3.3e-40 168.7 142 64.8
Nitab4.5_0007776g0010 Nicotiana tabacum HOM05D004988 ORTHO05D005845 5.5e-40 167.9 121 66.1
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 9.5e-40 167.2 207 48.8
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 4.7e-39 164.9 118 66.9
Glyma.02G292202 Glycine max HOM05D004988 ORTHO05D005845 1.8e-38 162.9 97 77.3
Ca_06330_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 3.0e-38 162.2 138 65.2
Ca_30701_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 3.0e-38 162.2 138 65.2
CsaV3_3G004590 Cucumis sativus L. HOM05D004988 ORTHO05D005845 1.2e-37 160.2 154 57.1
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 1.7e-36 156.4 134 60.4
HPP92_001598 Vanilla planifolia HOM05D004988 ORTHO05D005845 1.8e-35 152.9 142 58.5
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 1.0e-33 147.1 134 56.7
PGR083G0916 Punica granatum HOM05D004988 ORTHO05D005845 1.3e-33 146.7 140 58.6
Zm00001eb352660 Zea mays HOM05D004988 ORTHO05D005845 1.1e-32 143.7 134 56.7
Zm00001eb352670 Zea mays HOM05D004988 ORTHO05D005845 1.1e-32 143.7 134 56.7
HPP92_001600 Vanilla planifolia HOM05D004988 ORTHO05D005845 7.3e-32 141.0 142 55.6
HanXRQChr03g0079771 Helianthus annuus HOM05D004988 ORTHO05D005845 1.8e-30 136.3 100 69.0
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 9.2e-27 124.0 142 52.1
Sabra11G0073600 Salix brachista HOM05D004988 ORTHO05D005845 1.5e-24 116.7 151 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3443 Anthoceros agrestis HOM05D004988 ORTHO05D005845 3.6e-23 112.1 134 44.0
AL3G33310 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 1.4e-22 110.2 89 64.0
DCAR_009454 Daucus carota HOM05D004988 ORTHO05D005845 4.0e-22 108.6 136 47.1
SMO340G0188 Selaginella moellendorffii HOM05D004988 ORTHO05D005845 8.3e-20 100.9 134 42.5
Mapoly0055s0066 Marchantia polymorpha HOM05D004988 ORTHO05D005845 7.8e-18 94.4 134 38.8
HPP92_001589 Vanilla planifolia HOM05D004988 ORTHO05D005845 5.0e-17 91.7 142 42.3
Pp3c2_9530 Physcomitrium patens HOM05D004988 ORTHO05D005845 5.6e-16 88.2 141 41.1
Lj1C875G1 Lonicera japonica HOM05D004988 ORTHO05D005845 4.6e-10 68.6 51 60.8
COL.COLO4_09682 Corchorus olitorius HOM05D004988 ORTHO05D005845 3.9e-09 65.5 34 85.3
AL3G33270 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 6.8e-06 54.7 41 65.9
MCO03G358 Micromonas commoda HOM05D004988 ORTHO05D005845 8.9e-06 54.3 156 26.9


User provided reference genes

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