Gene: Carub.0003s2042
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s2042
- Transcript Identifier Carub.0003s2042.1
- Gene Type Coding gene
- Location scaffold_3 : 7321233-7328418 : positive
Gene Family Information
- ID HOM05D004988
- #Genes/#Species 149/95
- Phylogenetic origin
- ID ORTHO05D005845
- #Genes/#Species 151/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0003s2042.v1.1
- pacid 39239856
- synonym Carubv10015967m.g
Descriptions
- Description K08741 - DNA mismatch repair protein MSH5 (MSH5)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0051026 | ISO | PLAZA Integrative Orthology | chiasma assembly | AT3G20475 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G20475 |
| GO:0045143 | ISO | PLAZA Integrative Orthology | homologous chromosome segregation | AT3G20475 |
| GO:0000712 | ISO | PLAZA Integrative Orthology | resolution of meiotic recombination intermediates | Os05g0498300 |
| GO:0010777 | ISO | PLAZA Integrative Orthology | meiotic mismatch repair involved in reciprocal meiotic recombination | AT3G20475 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043073 | ISO | PLAZA Integrative Orthology | germ cell nucleus | AT3G20475 |
| GO:0000794 | ISO | PLAZA Integrative Orthology | condensed nuclear chromosome | AT3G20475 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR011184 | DNA mismatch repair Msh2-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR045076 | DNA mismatch repair MutS family |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| Mapman id | Description |
|---|---|
| 13.3.5.5.1.2.2 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5 |