Gene: FAN16G3602
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN16G3602
- Transcript Identifier FAN16G3602.1
- Gene Type Coding gene
- Location Fvb3-3 : 12558220-12573812 : negative
Gene Family Information
- ID HOM05D004988
- #Genes/#Species 149/95
- Phylogenetic origin
- ID ORTHO05D005845
- #Genes/#Species 151/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb3-3-snap-gene-125.29.v1.0.a1
- pacid 50532318
Descriptions
- Description PF00488//PF00903//PF05190//PF05192 - MutS domain V (MutS_V) // Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (Glyoxalase) // MutS family domain IV (MutS_IV) // MutS domain III (MutS_III)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0051026 | ISO | PLAZA Integrative Orthology | chiasma assembly | AT3G20475 |
| GO:0007131 | ISO | PLAZA Integrative Orthology | reciprocal meiotic recombination | AT3G20475 |
| GO:0045143 | ISO | PLAZA Integrative Orthology | homologous chromosome segregation | AT3G20475 |
| GO:0000712 | ISO | PLAZA Integrative Orthology | resolution of meiotic recombination intermediates | Os05g0498300 |
| GO:0010777 | ISO | PLAZA Integrative Orthology | meiotic mismatch repair involved in reciprocal meiotic recombination | AT3G20475 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043073 | ISO | PLAZA Integrative Orthology | germ cell nucleus | AT3G20475 |
| GO:0000794 | ISO | PLAZA Integrative Orthology | condensed nuclear chromosome | AT3G20475 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR004360 | Glyoxalase/fosfomycin resistance/dioxygenase domain |
| IPR045076 | DNA mismatch repair MutS family |
| IPR007861 | DNA mismatch repair protein MutS, clamp |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| Mapman id | Description |
|---|---|
| 13.3.5.5.1.2.2 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5 |
| 2.1.2.1 | Cellular respiration.glycolysis.methylglyoxal degradation.lactoyl-glutathione lyase (GLX1) |