Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 3.6e-85 318.2 156 100.0
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 9.4e-25 117.5 82 76.8
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 2.1e-24 116.3 82 75.6
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 4.7e-24 115.2 109 60.6
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 4.7e-24 115.2 109 60.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 6.1e-24 114.8 105 61.9
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 1.0e-23 114.0 105 61.9
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 1.0e-23 114.0 83 72.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 2.3e-23 112.8 101 64.4
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 6.7e-23 111.3 109 58.7
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 8.8e-23 110.9 113 58.4
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-22 110.5 109 57.8
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 1.1e-22 110.5 83 69.9
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 1.1e-22 110.5 83 69.9
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 2.0e-22 109.8 82 72.0
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 2.0e-22 109.8 83 68.7
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 2.0e-22 109.8 83 69.9
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 2.0e-22 109.8 84 70.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 4.4e-22 108.6 83 68.7
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 5.7e-22 108.2 113 54.9
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 7.4e-22 107.8 109 56.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 9.7e-22 107.5 83 68.7
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 9.7e-22 107.5 83 68.7
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 1.7e-21 106.7 81 64.2
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.7e-21 106.7 101 61.4
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 2.2e-21 106.3 83 67.5
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.2e-21 106.3 99 61.6
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 4.8e-21 105.1 83 66.3
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 6.3e-21 104.8 83 65.1
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 1.1e-20 104.0 83 66.3
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 1.4e-20 103.6 89 64.0
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 1.8e-20 103.2 113 54.0
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 1.8e-20 103.2 83 65.1
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 2.4e-20 102.8 83 65.1
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 3.1e-20 102.4 83 67.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 3.1e-20 102.4 83 66.3
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 3.1e-20 102.4 81 64.2
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 5.3e-20 101.7 83 62.7
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 5.3e-20 101.7 83 62.7
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 7.0e-20 101.3 83 63.9
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 9.1e-20 100.9 83 63.9
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 9.1e-20 100.9 81 63.0
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 9.1e-20 100.9 81 63.0
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 9.1e-20 100.9 81 63.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 9.1e-20 100.9 83 63.9
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 1.2e-19 100.5 80 63.8
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 1.2e-19 100.5 83 63.9
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 2.0e-19 99.8 83 63.9
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.6e-19 99.4 83 65.1
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 3.5e-19 99.0 83 63.9
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 4.5e-19 98.6 82 63.4
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 4.5e-19 98.6 83 62.7
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 5.9e-19 98.2 82 63.4
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 5.9e-19 98.2 109 53.2
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 7.7e-19 97.8 113 51.3
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 1.0e-18 97.4 82 61.0
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.0e-18 97.4 83 65.1
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 1.3e-18 97.1 82 62.2
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 1.3e-18 97.1 83 65.1
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 1.7e-18 96.7 82 61.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 2.9e-18 95.9 82 61.0
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 2.9e-18 95.9 82 61.0
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 2.9e-18 95.9 82 61.0
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 2.9e-18 95.9 82 61.0
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 2.9e-18 95.9 88 58.0
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 2.9e-18 95.9 103 54.4
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 2.9e-18 95.9 103 54.4
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 2.9e-18 95.9 103 54.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 3.8e-18 95.5 82 61.0
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 5.0e-18 95.1 83 61.4
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 5.0e-18 95.1 105 53.3
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 6.5e-18 94.7 82 59.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 6.5e-18 94.7 105 52.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 8.5e-18 94.4 113 49.6
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 8.5e-18 94.4 82 59.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 8.5e-18 94.4 90 54.4
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 8.5e-18 94.4 90 54.4
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 8.5e-18 94.4 83 57.8
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 8.5e-18 94.4 82 59.8
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 8.5e-18 94.4 87 58.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 8.5e-18 94.4 87 57.5
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 1.1e-17 94.0 82 59.8
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 1.1e-17 94.0 82 59.8
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 1.1e-17 94.0 80 61.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 1.1e-17 94.0 80 61.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 1.4e-17 93.6 83 57.8
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 1.4e-17 93.6 82 58.5
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 1.9e-17 93.2 83 55.4
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 2.5e-17 92.8 81 63.0
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 3.2e-17 92.4 83 59.0
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 4.2e-17 92.0 80 60.0
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 4.2e-17 92.0 83 60.2
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 1.2e-16 90.5 83 60.2
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 1.6e-16 90.1 82 59.8
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.7e-16 89.4 89 53.9
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.7e-16 89.4 89 53.9
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.8e-12 76.6 93 46.2
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 2.0e-11 73.2 82 47.6
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 2.6e-11 72.8 83 54.2
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 2.6e-11 72.8 65 58.5
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.2e-10 69.7 82 42.7
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 5.5e-09 65.1 82 41.5
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.2e-08 63.9 51 62.7
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.6e-08 63.5 88 38.6
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 8.0e-08 61.2 78 50.0
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.0e-07 60.8 35 80.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 4.0e-07 58.9 33 81.8
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 8.8e-07 57.8 32 84.4
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 4.4e-06 55.5 80 38.8


User provided reference genes

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