Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 2.0e-86 322.4 160 100.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 2.4e-47 192.6 150 68.0
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 7.6e-46 187.6 160 65.0
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 1.1e-31 140.6 132 55.3
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 1.2e-30 137.1 104 64.4
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 2.2e-29 132.9 122 59.0
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 4.9e-29 131.7 153 54.9
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 5.4e-28 128.3 129 52.7
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 4.6e-27 125.2 118 52.5
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 1.1e-25 120.6 137 46.7
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.3e-24 117.1 125 55.2
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 2.1e-24 116.3 93 57.0
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 3.7e-24 115.5 137 45.3
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 6.2e-24 114.8 98 55.1
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.1e-23 114.0 106 50.0
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 2.4e-23 112.8 93 54.8
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.2e-22 110.5 126 44.4
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.5e-22 110.2 146 42.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.5e-22 110.2 165 38.8
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 1.5e-22 110.2 154 42.2
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 2.0e-22 109.8 102 52.9
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 3.4e-22 109.0 99 54.5
Medtr2g104810 Medicago truncatula HOM05D000399 ORTHO05D010012 3.4e-22 109.0 96 61.5
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.5e-22 108.6 131 42.7
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 4.5e-22 108.6 104 48.1
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 1.3e-21 107.1 114 45.6
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.3e-21 107.1 89 56.2
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.3e-21 107.1 127 42.5
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.7e-21 106.7 140 41.4
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 2.2e-21 106.3 95 52.6
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.2e-21 106.3 150 39.3
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 2.2e-21 106.3 93 51.6
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 2.9e-21 105.9 103 47.6
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 2.9e-21 105.9 104 46.2
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 2.9e-21 105.9 120 50.0
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 2.9e-21 105.9 120 50.0
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 2.9e-21 105.9 121 47.9
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 3.8e-21 105.5 147 36.7
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 3.8e-21 105.5 147 38.1
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 3.8e-21 105.5 117 45.3
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 6.4e-21 104.8 139 41.7
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 6.4e-21 104.8 92 50.0
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.4e-21 104.8 115 47.0
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 8.4e-21 104.4 147 36.1
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.4e-21 104.4 127 42.5
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.4e-21 104.4 92 56.5
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 1.1e-20 104.0 92 50.0
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.1e-20 104.0 93 51.6
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.1e-20 104.0 97 46.4
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.4e-20 103.6 89 52.8
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 1.9e-20 103.2 139 38.8
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 1.9e-20 103.2 145 38.6
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 2.5e-20 102.8 139 41.0
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.5e-20 102.8 93 51.6
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-20 102.8 145 38.6
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 3.2e-20 102.4 96 52.1
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 3.2e-20 102.4 89 55.1
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.2e-20 102.1 89 55.1
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.5e-20 101.7 89 55.1
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.5e-20 101.7 89 55.1
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 7.1e-20 101.3 148 35.1
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 7.1e-20 101.3 98 52.0
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 9.3e-20 100.9 92 51.1
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 1.2e-19 100.5 104 46.2
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-19 100.5 112 42.9
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.6e-19 100.1 95 50.5
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.1e-19 99.8 93 50.5
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 2.7e-19 99.4 156 35.3
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 2.7e-19 99.4 94 53.2
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.7e-19 99.4 93 52.7
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 2.7e-19 99.4 151 38.4
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.5e-19 99.0 115 42.6
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 6.0e-19 98.2 93 50.5
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 7.9e-19 97.8 128 42.2
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 7.9e-19 97.8 94 47.9
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 1.0e-18 97.4 105 45.7
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 1.0e-18 97.4 93 50.5
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.0e-18 97.4 88 52.3
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 1.0e-18 97.4 92 53.3
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 1.3e-18 97.1 93 49.5
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-18 97.1 151 36.4
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.3e-18 97.1 93 50.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.3e-18 97.1 89 49.4
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 1.8e-18 96.7 93 49.5
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.8e-18 96.7 120 44.2
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 1.8e-18 96.7 119 41.2
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.3e-18 96.3 91 51.6
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 2.3e-18 96.3 93 49.5
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 3.0e-18 95.9 150 40.7
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 3.0e-18 95.9 95 49.5
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 3.0e-18 95.9 89 51.7
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.0e-18 95.9 153 37.9
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 5.1e-18 95.1 158 34.2
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 6.7e-18 94.7 126 43.7
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 6.7e-18 94.7 134 40.3
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 6.7e-18 94.7 104 47.1
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 8.7e-18 94.4 113 45.1
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 1.1e-17 94.0 94 47.9
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.5e-17 93.6 130 36.9
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.5e-17 93.6 150 33.3
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.5e-17 93.6 89 51.7
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 1.5e-17 93.6 128 37.5
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 1.5e-17 93.6 92 48.9
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 2.5e-17 92.8 88 52.3
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.5e-17 92.8 157 34.4
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 2.5e-17 92.8 92 50.0
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.5e-17 92.8 92 50.0
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 3.3e-17 92.4 113 44.2
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.3e-17 92.4 149 36.2
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 5.6e-17 91.7 121 40.5
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 5.6e-17 91.7 112 42.9
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 5.6e-17 91.7 83 51.8
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.4e-17 91.3 158 36.1
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 7.4e-17 91.3 126 38.1
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 7.4e-17 91.3 114 42.1
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 7.4e-17 91.3 131 42.0
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 9.6e-17 90.9 155 31.0
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.3e-16 90.5 88 46.6
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.3e-16 90.5 157 36.9
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 1.3e-16 90.5 103 47.6
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 1.6e-16 90.1 157 33.8
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.1e-16 89.7 147 39.5
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.1e-16 89.7 146 34.2
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 2.1e-16 89.7 121 42.1
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.1e-16 89.7 157 37.6
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 2.1e-16 89.7 133 40.6
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.7e-16 89.0 93 45.2
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 3.7e-16 89.0 115 40.0
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.8e-16 88.6 96 47.9
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.2e-16 87.8 163 35.6
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.4e-15 87.0 88 48.9
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 2.4e-15 86.3 121 37.2
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 4.0e-15 85.5 105 41.9
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 4.0e-15 85.5 135 37.0
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 4.0e-15 85.5 99 38.4
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 4.0e-15 85.5 89 47.2
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 4.0e-15 85.5 120 40.8
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 6.9e-15 84.7 89 46.1
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 6.9e-15 84.7 89 50.6
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.9e-15 84.7 89 44.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 9.0e-15 84.3 139 38.8
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 9.0e-15 84.3 89 46.1
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 9.0e-15 84.3 111 38.7
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.2e-14 84.0 89 47.2
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.2e-14 84.0 94 44.7
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.2e-14 84.0 89 47.2
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 1.5e-14 83.6 103 46.6
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 2.6e-14 82.8 144 36.1
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 3.4e-14 82.4 108 46.3
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 3.4e-14 82.4 108 46.3
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 5.8e-14 81.6 144 36.1
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 1.3e-13 80.5 139 33.8
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 2.9e-13 79.3 148 33.1
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 3.8e-13 79.0 171 32.7
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 3.8e-13 79.0 76 52.6
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.8e-13 79.0 129 35.7
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 4.9e-13 78.6 105 42.9
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 6.5e-13 78.2 152 32.2
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 1.1e-12 77.4 68 54.4
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 1.1e-12 77.4 151 31.8
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 1.4e-12 77.0 152 31.6
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.4e-12 77.0 151 30.5
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 1.9e-12 76.6 92 43.5
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 4.2e-12 75.5 114 37.7
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 7.1e-12 74.7 85 44.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-11 73.6 117 36.8
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 1.6e-11 73.6 111 36.9
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 2.7e-11 72.8 111 36.9
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 6.1e-11 71.6 111 36.9
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 7.9e-11 71.2 111 36.9
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 3.0e-10 69.3 162 34.0
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.0e-10 69.3 158 31.6
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 1.5e-09 67.0 65 52.3
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 1.1e-07 60.8 63 52.4
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.4e-07 59.7 50 48.0
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 3.1e-07 59.3 31 71.0
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 2.6e-06 56.2 88 37.5
SEGI_19919 Sequoiadendron giganteum HOM05D000399 ORTHO05D010012 7.7e-06 54.7 151 27.8


User provided reference genes

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