Gene: TPR.G15773
General Information
Structural Information
- Species Trifolium pratense
- Gene Identifier TPR.G15773
- Transcript Identifier TPR.T16310
- Gene Type Coding gene
- Location Tp57577_TGAC_v2_LG4 : 1634285-1646257 : negative
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Tp57577_TGAC_v2_mRNA16310.v2
- id Tp57577_TGAC_v2_gene15773.v2
- pacid 35965931
- uniprot A0A2K3L1I0
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT5G20320 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT5G20320 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT5G20320 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT5G20320 |
| GO:0010599 | ISO | PLAZA Integrative Orthology | production of lsiRNA involved in RNA interference | AT5G20320 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | Solyc07g005030.4 |
| GO:0009616 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immune response | AT5G20320 |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT5G20320 |
| GO:0009944 | ISO | PLAZA Integrative Orthology | polarity specification of adaxial/abaxial axis | Os04g0509300 |
| GO:0006353 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, termination | AT5G20320 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT5G20320 |
| GO:0048608 | ISO | PLAZA Integrative Orthology | reproductive structure development | Os04g0509300 |
| GO:0010492 | ISO | PLAZA Integrative Orthology | maintenance of shoot apical meristem identity | Os04g0509300 |
| GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic | |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0016891 | IEA | GOA Database | endoribonuclease activity, producing 5'-phosphomonoesters | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005524 | IEA | InterPro | ATP binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G20320 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR003100 | PAZ domain |
| IPR000999 | Ribonuclease III domain |
| IPR001650 | Helicase, C-terminal |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR036085 | PAZ domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR014720 | Double-stranded RNA-binding domain |
| Mapman id | Description |
|---|---|
| 16.9.1.3 | RNA processing.mRNA silencing.transacting siRNA pathway.endoribonuclease (DCL4) |