Gene: AT1G80650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G80650
  • Transcript Identifier AT1G80650.4
  • Gene Type Coding gene
  • Location Chr1 : 30314609-30315539 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G80650.4
  • symbol RTL1
  • uniprot Q9M8N2

Descriptions

  • Description RNAse THREE-like protein 1
  • Computational description RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1); Has 100 Blast hits to 100 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0030422
IBA
GOA Databaseproduction of siRNA involved in RNA interference
GO:0006396
ISO
PLAZA Homology (enrichment)RNA processing HOM05D000399

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0004525
IBA
GOA Databaseribonuclease III activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
No InterPro domains detected for this gene.
Mapman id Description
35.1 not assigned.annotated