Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 6.8e-176 620.5 310 100.0
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 7.3e-154 547.4 290 93.1
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 7.8e-148 527.3 290 89.7
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 3.3e-146 521.9 291 88.3
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 2.8e-145 518.8 291 87.6
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 4.0e-144 515.0 290 85.5
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 2.6e-143 512.3 290 86.2
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.3e-142 510.0 290 86.9
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 1.4e-141 506.5 290 85.5
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 1.6e-140 503.1 291 84.2
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 1.5e-135 486.5 290 82.4
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 1.5e-135 486.5 290 82.1
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 1.5e-135 486.5 290 81.4
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 3.4e-135 485.3 290 81.4
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 5.8e-135 484.6 290 80.3
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 9.9e-135 483.8 291 80.4
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 2.2e-134 482.6 290 81.7
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 3.8e-134 481.9 292 81.5
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 4.2e-133 478.4 290 80.7
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 9.3e-133 477.2 291 80.8
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 9.3e-133 477.2 290 81.7
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 1.2e-132 476.9 290 80.0
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.0e-131 473.8 290 79.3
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.0e-131 473.8 290 80.3
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.3e-131 473.4 290 78.6
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 1.7e-131 473.0 290 79.3
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.3e-131 472.6 290 80.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 2.3e-131 472.6 291 79.0
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 3.0e-131 472.2 290 79.0
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 6.6e-131 471.1 290 79.3
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 8.7e-131 470.7 290 79.3
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.9e-130 469.5 290 79.7
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.5e-130 469.2 290 79.0
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 3.3e-130 468.8 290 79.0
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 5.6e-130 468.0 290 79.3
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 1.3e-129 466.8 290 77.9
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 1.6e-129 466.5 291 78.7
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 2.1e-129 466.1 290 78.3
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.1e-129 466.1 290 79.0
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 3.6e-129 465.3 290 76.6
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 3.6e-129 465.3 290 78.3
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 4.8e-129 464.9 290 78.3
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.1e-128 463.8 290 76.9
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 1.1e-128 463.8 290 77.6
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 4.0e-128 461.8 290 77.6
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 1.5e-127 459.9 290 77.6
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.6e-127 459.1 290 76.6
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.4e-127 458.8 290 76.6
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 3.4e-127 458.8 291 76.6
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.6e-127 457.6 290 76.2
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 7.6e-127 457.6 291 76.6
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 1.3e-126 456.8 291 76.6
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.7e-126 456.4 292 76.0
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.9e-126 454.9 290 76.6
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 4.9e-126 454.9 290 75.9
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 2.1e-124 449.5 293 74.4
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 3.5e-124 448.7 290 75.9
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 6.0e-124 448.0 290 75.9
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.8e-123 446.4 291 73.5
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 2.3e-123 446.0 291 75.3
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 6.7e-123 444.5 290 73.4
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 5.6e-122 441.4 291 75.3
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 1.1e-120 437.2 290 73.1
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 1.4e-120 436.8 290 72.8
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 5.3e-120 434.9 292 71.6
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 3.4e-119 432.2 318 72.3
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 4.5e-119 431.8 292 72.6
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 7.6e-119 431.0 298 70.1
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 7.6e-119 431.0 290 70.0
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.7e-118 429.9 290 69.7
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 3.8e-118 428.7 266 77.4
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 6.4e-118 427.9 290 71.4
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.1e-117 427.2 288 73.3
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 2.4e-117 426.0 297 70.7
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 7.1e-117 424.5 290 70.0
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 1.6e-116 423.3 292 70.5
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 2.1e-116 422.9 297 69.7
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 3.0e-115 419.1 290 69.0
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 8.7e-115 417.5 290 69.0
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 2.5e-114 416.0 290 70.3
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 2.5e-114 416.0 290 69.7
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 4.3e-114 415.2 290 70.0
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 2.4e-112 409.5 290 69.3
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 5.3e-112 408.3 290 69.7
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 1.2e-111 407.1 290 67.6
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-111 406.4 295 68.8
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 2.2e-110 402.9 290 70.0
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.5e-109 398.3 360 58.3
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 9.3e-109 397.5 297 64.3
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 3.5e-108 395.6 292 65.4
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 4.6e-108 395.2 290 65.9
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 1.3e-107 393.7 292 64.7
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 5.1e-107 391.7 290 65.5
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 8.7e-107 391.0 290 67.9
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 4.3e-106 388.7 315 65.1
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 9.0e-104 380.9 308 64.0
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.2e-102 376.3 303 64.7
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 2.9e-102 375.9 292 64.7
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 1.4e-101 373.6 213 85.9
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 6.1e-100 368.2 291 64.9
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 7.9e-100 367.9 303 63.7
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 1.7e-97 360.1 290 59.7
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 2.8e-97 359.4 294 59.5
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 4.8e-97 358.6 328 59.5
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 1.2e-95 354.0 290 63.4
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.0e-95 353.2 290 62.4
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-94 350.5 290 62.4
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 4.2e-93 345.5 296 58.4
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-92 343.2 254 67.7
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.9e-88 328.2 214 72.4
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.2e-86 323.2 244 66.8
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.1e-84 315.1 207 72.0
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.7e-82 308.5 290 58.6
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 2.0e-79 300.1 258 64.3
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 1.3e-73 280.8 298 49.3
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 1.7e-73 280.4 290 55.9
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.8e-72 276.9 263 57.0
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.0e-71 273.5 301 52.2
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 4.4e-66 255.8 332 43.1
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 8.3e-65 251.5 290 52.1
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 1.7e-62 243.8 290 49.3
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 2.3e-62 243.4 214 57.9
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 1.2e-60 237.7 292 45.2
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 6.1e-60 235.3 298 49.7
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 8.0e-60 235.0 299 48.2
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.6e-58 229.9 175 62.3
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.7e-57 226.1 131 84.7
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 9.5e-53 211.5 133 78.2
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 1.6e-52 210.7 131 78.6
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 8.0e-52 208.4 132 78.0
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 1.2e-50 204.5 296 40.9
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 6.4e-49 198.7 133 72.9
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.8e-48 197.2 133 73.7
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 4.1e-48 196.1 161 60.2
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 2.0e-47 193.7 299 38.1
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.1e-45 188.0 246 46.3
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.5e-45 187.6 137 68.6
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 1.7e-41 174.1 329 33.1
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 1.1e-40 171.4 265 42.6
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.1e-39 167.2 215 44.7
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.7e-38 164.1 195 46.7
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 6.2e-36 155.6 98 76.5
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 8.1e-36 155.2 166 53.0
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 6.8e-35 152.1 173 50.3
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 8.9e-35 151.8 127 60.6
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.1e-31 140.6 246 35.8
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 1.2e-26 124.8 106 56.6
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 5.8e-26 122.5 157 46.5
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 7.1e-24 115.5 163 46.0
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 9.2e-24 115.2 109 54.1
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 9.2e-24 115.2 109 54.1
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 1.2e-23 114.8 143 47.6
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 1.2e-23 114.8 143 47.6
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 3.0e-22 110.2 141 48.2
QL03p031079 Quercus lobata HOM05D003851 ORTHO05D004072 9.6e-21 105.1 72 66.7
QL03p031464 Quercus lobata HOM05D003851 ORTHO05D004072 9.6e-21 105.1 72 66.7
SEGI_10710 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 7.8e-15 85.5 72 63.9
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 6.6e-14 82.4 118 47.5
Gorai.005G191100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.1e-12 77.4 59 62.7
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-12 77.0 211 28.9
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 8.1e-12 75.5 125 44.0
AUR62031015 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.4e-11 73.9 67 49.3
BcaC04g18815 Brassica carinata HOM05D012846 ORTHO05D016740 5.4e-08 62.8 39 76.9
BcaC01g02515 Brassica carinata HOM05D012846 ORTHO05D039543 1.6e-07 61.2 120 40.0
BolC3t18653H Brassica oleracea HOM05D012846 ORTHO05D016740 1.6e-07 61.2 120 40.0
C03p63990 Brassica napus HOM05D012846 ORTHO05D039543 2.7e-07 60.5 62 54.8
A07p09770 Brassica napus HOM05D012846 ORTHO05D016740 1.8e-06 57.8 62 53.2
BraA09t40262Z Brassica rapa HOM05D012846 ORTHO05D016740 3.0e-06 57.0 32 84.4
C08p20140 Brassica napus HOM05D012846 ORTHO05D016740 3.9e-06 56.6 57 56.1


User provided reference genes

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