Gene: AT5G06160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G06160
  • Transcript Identifier AT5G06160.1
  • Gene Type Coding gene
  • Location Chr5 : 1862623-1866298 : negative

Gene Family Information

  • ID HOM05D003934
  • #Genes/#Species 177/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G06160.1
  • symbol ATO
  • full_name ATROPOS
  • uniprot Q9FG01

Descriptions

  • Description splicing factor-like protein
  • Computational description ATROPOS (ATO); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of embryo sac egg cell differentiation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type matrin (InterPro:IPR000690), Splicing factor SF3a60 binding domain (InterPro:IPR021966); Has 679 Blast hits to 673 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 136; Plants - 106; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0045694
IMP
Gene Ontologyregulation of embryo sac egg cell differentiation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0008270
IEA
Gene Ontologyzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex1
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021966 Splicing factor SF3a60 binding domain
IPR031774 SF3A3 domain
IPR024598 Splicing factor SF3a60 subunit C-terminal
Mapman id Description
16.2.1.2.3.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A3