Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17006 Trifolium pratense HOM05D004823 ORTHO05D005814 3.2e-44 181.4 93 100.0
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 6.4e-21 104.0 53 96.2
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 2.1e-19 99.0 53 90.6
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 3.5e-19 98.2 53 90.6
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.3e-18 96.3 53 86.8
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 1.7e-18 95.9 53 88.7
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 5.1e-18 94.4 53 84.9
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 2.5e-17 92.0 53 86.8
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 2.1e-16 89.0 53 81.1
Sabra14G0140300 Salix brachista HOM05D004823 ORTHO05D005814 2.8e-16 88.6 62 71.0
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 4.7e-16 87.8 54 79.6
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 6.2e-16 87.4 53 75.5
RcHm_v2.0_Chr2g0122971 Rosa chinensis HOM05D004823 ORTHO05D005814 8.1e-16 87.0 53 77.4
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 1.1e-15 86.7 53 79.2
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.4e-15 86.3 53 77.4
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 1.4e-15 86.3 53 84.9
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 1.4e-15 86.3 53 77.4
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 1.4e-15 86.3 54 77.8
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 75.5
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 77.4
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 77.4
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 79.2
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 79.2
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 79.2
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 1.8e-15 85.9 53 77.4
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 4.0e-15 84.7 53 77.4
SHI13671 Sapria himalayana HOM05D004823 ORTHO05D005814 4.0e-15 84.7 61 68.9
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 4.0e-15 84.7 53 79.2
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 6.8e-15 84.0 63 66.7
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 6.8e-15 84.0 53 77.4
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 8.9e-15 83.6 53 77.4
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 8.9e-15 83.6 53 77.4
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 8.9e-15 83.6 53 73.6
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 1.2e-14 83.2 63 66.7
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 1.5e-14 82.8 53 77.4
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 1.5e-14 82.8 53 77.4
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 2.0e-14 82.4 63 66.7
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 2.0e-14 82.4 63 66.7
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 2.6e-14 82.0 53 75.5
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 2.6e-14 82.0 53 75.5
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 3.4e-14 81.6 60 68.3
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 4.4e-14 81.3 53 75.5
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 4.4e-14 81.3 53 73.6
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 5.8e-14 80.9 60 68.3
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 7.6e-14 80.5 53 75.5
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 7.6e-14 80.5 53 75.5
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 7.6e-14 80.5 53 71.7
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 7.6e-14 80.5 60 66.7
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 9.9e-14 80.1 53 75.5
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 9.9e-14 80.1 53 69.8
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 9.9e-14 80.1 53 71.7
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 1.3e-13 79.7 53 73.6
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 1.3e-13 79.7 53 73.6
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 1.7e-13 79.3 53 73.6
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 1.7e-13 79.3 53 69.8
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 1.7e-13 79.3 53 69.8
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.7e-13 79.3 53 75.5
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 71.7
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 71.7
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 71.7
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 75.5
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 75.5
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 2.2e-13 79.0 53 73.6
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 2.2e-13 79.0 60 65.0
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 2.2e-13 79.0 60 65.0
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 2.9e-13 78.6 62 59.7
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 2.9e-13 78.6 40 92.5
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 2.9e-13 78.6 49 79.6
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 2.9e-13 78.6 53 71.7
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 3.8e-13 78.2 53 69.8
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 4.9e-13 77.8 53 73.6
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 4.9e-13 77.8 53 73.6
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 4.9e-13 77.8 53 71.7
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 6.4e-13 77.4 76 55.3
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 6.4e-13 77.4 53 71.7
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 8.4e-13 77.0 53 69.8
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 1.1e-12 76.6 53 69.8
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.1e-12 76.6 53 69.8
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.4e-12 76.3 72 56.9
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 1.9e-12 75.9 53 69.8
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 2.4e-12 75.5 53 71.7
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 3.2e-12 75.1 38 100.0
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 5.4e-12 74.3 53 66.0
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 7.1e-12 73.9 53 66.0
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 7.1e-12 73.9 53 66.0
ATR0705G006 Amborella trichopoda HOM05D004823 ORTHO05D005814 9.3e-12 73.6 53 66.0
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 1.6e-11 72.8 53 67.9
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 2.1e-11 72.4 81 51.9
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 2.7e-11 72.0 40 90.0
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 6.0e-11 70.9 53 64.2
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 7.8e-11 70.5 73 50.7
HPP92_003324 Vanilla planifolia HOM05D004823 ORTHO05D005814 3.0e-10 68.6 51 64.7
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 3.9e-10 68.2 53 64.2
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 2.5e-09 65.5 51 62.7
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 4.0e-07 58.2 57 57.9
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 4.4e-06 54.7 25 100.0
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 9.9e-06 53.5 29 82.8


User provided reference genes

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