Gene: AT1G08840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G08840
  • Transcript Identifier AT1G08840.2
  • Gene Type Coding gene
  • Location Chr1 : 2829579-2838369 : negative

Gene Family Information

  • ID HOM05D004823
  • #Genes/#Species 153/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G08840.2
  • symbol emb2411
  • full_name embryo defective 2411
  • uniprot F4HXR5

Descriptions

  • Description DNA replication helicase
  • Computational description embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240; Bacteria - 1986; Metazoa - 1238; Fungi - 1140; Plants - 545; Viruses - 30; Other Eukaryotes - 942 (source: NCBI BLink).
  • Computational description embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006260
IEA
GOA DatabaseDNA replication
GO:0006260
IMP
Gene OntologyDNA replication1
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IMP
Gene OntologyDNA repair1
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006974
IMP
Gene Ontologycellular response to DNA damage stimulus1
GO:0008152
IEA
GOA Databasemetabolic process
GO:0033567
IEA
Gene OntologyDNA replication, Okazaki fragment processing
GO:0033567
IEA
InterProDNA replication, Okazaki fragment processing
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0010073
IMP
Gene Ontologymeristem maintenance1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0017108
IEA
GOA Database5'-flap endonuclease activity
GO:0017108
IEA
InterPro5'-flap endonuclease activity
GO:0017116
IEA
Gene Ontologysingle-stranded DNA helicase activity
GO:0017116
IEA
InterProsingle-stranded DNA helicase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011604 Exonuclease, phage-type/RecB, C-terminal
IPR041677 DNA2/NAM7 helicase, helicase domain
IPR045055 DNA2/NAM7-like helicase
IPR014808 DNA replication factor Dna2, N-terminal
IPR041679 DNA2/NAM7 helicase-like, C-terminal
IPR026851 DNA replication ATP-dependent helicase/nuclease Dna2
Mapman id Description
13.2.4.4 Cell cycle organisation.DNA replication.maturation.auxiliary factor (JHS1/DNA2)