Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 7.5e-139 497.3 268 100.0
Medtr7g066970 Medicago truncatula HOM05D000773 ORTHO05D000588 2.2e-29 133.7 184 44.6
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.8e-28 130.6 68 98.5
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 1.6e-27 127.5 68 95.6
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 3.5e-27 126.3 68 94.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.3e-26 124.4 68 92.6
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.3e-26 124.4 68 94.1
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.2e-26 123.6 68 92.6
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 2.9e-26 123.2 68 92.6
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.2e-25 119.8 68 91.2
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.2e-25 119.4 68 88.2
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 5.5e-25 119.0 68 86.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.5e-25 119.0 68 86.8
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 7.2e-25 118.6 68 86.8
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 7.2e-25 118.6 68 86.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 9.4e-25 118.2 68 85.3
TPR.G1578 Trifolium pratense HOM05D000773 ORTHO05D000588 1.2e-24 117.9 201 39.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.6e-24 117.5 68 85.3
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.6e-24 117.5 68 88.2
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 2.1e-24 117.1 68 86.8
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.1e-24 117.1 68 86.8
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.7e-24 116.7 68 82.4
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.7e-24 116.7 68 83.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.6e-24 116.3 68 83.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-24 116.3 68 85.3
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.7e-24 115.9 68 83.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.7e-24 115.9 68 83.8
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 6.1e-24 115.5 68 83.8
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 6.1e-24 115.5 68 82.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 80.9
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.0e-23 114.8 68 82.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.4e-23 114.4 68 80.9
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.4e-23 114.4 68 80.9
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.8e-23 114.0 68 82.4
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.3e-23 113.6 68 80.9
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 3.0e-23 113.2 68 82.4
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.0e-23 113.2 68 82.4
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.0e-23 112.8 68 80.9
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 5.2e-23 112.5 68 79.4
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 6.8e-23 112.1 68 80.9
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 6.8e-23 112.1 68 83.8
Medtr8g098880 Medicago truncatula HOM05D000773 ORTHO05D000588 8.8e-23 111.7 150 46.0
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-22 110.9 67 82.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.0e-22 110.5 68 79.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.0e-22 110.5 68 80.9
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 77.9
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 77.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 77.9
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 79.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 82.4
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 3.4e-22 109.8 68 77.9
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.4e-22 109.4 68 77.9
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 5.7e-22 109.0 70 78.6
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 5.7e-22 109.0 68 80.9
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 5.7e-22 109.0 68 77.9
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 75.0
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 75.0
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 75.0
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 75.0
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 75.0
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 76.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.3e-21 107.8 68 76.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.7e-21 107.5 68 75.0
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-21 107.5 68 75.0
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-21 107.5 68 76.5
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.7e-21 107.5 68 75.0
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.7e-21 107.5 61 88.5
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.7e-21 107.5 68 77.9
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.2e-21 107.1 70 75.7
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.2e-21 107.1 68 77.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.2e-21 107.1 68 77.9
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.8e-21 106.7 68 73.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.8e-21 106.7 68 72.1
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.7e-21 106.3 68 73.5
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.7e-21 106.3 68 73.5
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.7e-21 106.3 70 77.1
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 3.7e-21 106.3 68 76.5
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.7e-21 106.3 68 76.5
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 4.8e-21 105.9 68 76.5
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.8e-21 105.9 68 73.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 8.3e-21 105.1 68 72.1
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 8.3e-21 105.1 68 76.5
Medtr7g067580 Medicago truncatula HOM05D000773 ORTHO05D000588 8.3e-21 105.1 104 55.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-20 104.4 68 72.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.4e-20 104.4 70 70.0
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.4e-20 104.4 68 75.0
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.8e-20 104.0 68 75.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 3.1e-20 103.2 68 73.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.1e-20 102.8 68 70.6
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.1e-20 102.8 60 83.3
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 4.1e-20 102.8 70 68.6
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 7.0e-20 102.1 57 84.2
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.1e-20 101.7 78 67.9
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.2e-19 101.3 68 72.1
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 2.0e-19 100.5 68 72.1
Medtr7g066880 Medicago truncatula HOM05D000773 ORTHO05D000588 2.7e-19 100.1 163 41.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.5e-19 99.4 68 70.6
Ca_05717_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 4.5e-19 99.4 104 51.9
Ca_07609_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 4.5e-19 99.4 104 51.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.0e-18 98.2 68 69.1
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.3e-18 97.1 68 73.5
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.3e-18 97.1 68 73.5
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.3e-18 97.1 57 80.7
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.9e-18 96.7 64 70.3
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.8e-18 96.3 62 74.2
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.8e-18 96.3 68 67.6
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 3.8e-18 96.3 70 74.3
Ca_07611_v3 Cicer arietinum L. HOM05D000773 ORTHO05D000588 6.6e-18 95.5 98 51.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 6.6e-18 95.5 64 68.8
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.9e-17 94.0 68 70.6
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 2.5e-17 93.6 68 69.1
TPR.G1589 Trifolium pratense HOM05D000773 ORTHO05D000588 2.5e-17 93.6 174 37.4
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 3.3e-17 93.2 67 62.7
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 4.2e-17 92.8 69 72.5
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.5e-17 92.4 68 69.1
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.6e-16 90.9 68 75.0
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.6e-16 89.7 68 67.6
TPR.G1568 Trifolium pratense HOM05D000773 ORTHO05D000588 4.7e-16 89.4 164 39.0
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 8.0e-16 88.6 59 72.9
Lj4g0007126 Lotus japonicus HOM05D000773 ORTHO05D000588 6.8e-15 85.5 195 34.9
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.6e-14 83.6 64 59.4
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.6e-14 83.6 69 65.2
Glyma.07G145600 Glycine max HOM05D000773 ORTHO05D000588 3.4e-14 83.2 162 36.4
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-12 77.8 56 67.9
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.4e-12 77.8 55 63.6
Psat6g094480 Pisum sativum HOM05D000773 ORTHO05D000588 2.4e-12 77.0 170 32.9
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.2e-12 76.6 69 60.9
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 7.0e-12 75.5 55 61.8
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.0e-12 75.5 48 68.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.7e-11 73.6 173 33.5
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 3.5e-11 73.2 71 56.3
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.9e-11 72.4 56 57.1
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 5.9e-11 72.4 42 83.3
Phvul.008G107600 Phaseolus vulgaris HOM05D000773 ORTHO05D000588 5.9e-11 72.4 171 36.8
Psat6g094440 Pisum sativum HOM05D000773 ORTHO05D000588 5.9e-11 72.4 166 33.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 5.9e-11 72.4 38 89.5
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 7.8e-11 72.0 66 57.6
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 7.8e-11 72.0 68 51.5
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.9e-10 70.1 58 62.1
Lalb_Chr03g0042181 Lupinus albus HOM05D000773 ORTHO05D000588 2.9e-10 70.1 238 28.6
Psat0s2251g0080 Pisum sativum HOM05D000773 ORTHO05D000588 8.6e-10 68.6 102 40.2
arahy.Tifrunner.gnm1.ann1.BYNY5R Arachis hypogaea HOM05D000773 ORTHO05D000588 1.9e-09 67.4 158 32.9
TPR.G1571 Trifolium pratense HOM05D000773 ORTHO05D000588 2.5e-09 67.0 50 60.0
Psat3g131360 Pisum sativum HOM05D000773 ORTHO05D000588 3.3e-09 66.6 144 33.3
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 4.3e-09 66.2 45 66.7
Medtr7g066920 Medicago truncatula HOM05D000773 ORTHO05D000588 4.3e-09 66.2 51 58.8
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 9.5e-09 65.1 40 75.0
VMungo1383G0179 Vigna mungo HOM05D000773 ORTHO05D000588 1.2e-08 64.7 154 35.1
Medtr7g066890 Medicago truncatula HOM05D000773 ORTHO05D000588 3.6e-08 63.2 101 38.6
Lalb_Chr19g0125361 Lupinus albus HOM05D000773 ORTHO05D000588 8.0e-08 62.0 101 40.6
Lj4g0001914 Lotus japonicus HOM05D000773 ORTHO05D000588 1.0e-07 61.6 183 29.5
arahy.Tifrunner.gnm1.ann1.AG8GG0 Arachis hypogaea HOM05D000773 ORTHO05D000588 5.8e-06 55.8 102 37.3


User provided reference genes

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