Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15753 Trifolium pratense HOM05D001363 ORTHO05D002212 3.6e-109 398.7 263 100.0
Medtr5g042180 Medicago truncatula HOM05D002036 ORTHO05D001913 1.8e-20 104.0 134 53.7
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 6.9e-20 102.1 118 56.8
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 4.5e-19 99.4 85 69.4
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 4.5e-19 99.4 100 64.0
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 7.6e-19 98.6 118 54.2
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 1.3e-18 97.8 85 68.2
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 2.2e-18 97.1 84 67.9
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 2.9e-18 96.7 85 67.1
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 3.8e-18 96.3 85 65.9
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 4.9e-18 95.9 164 44.5
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 4.9e-18 95.9 123 54.5
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 4.2e-17 92.8 118 52.5
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 5.4e-17 92.4 100 59.0
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 2.1e-16 90.5 100 60.0
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 2.1e-16 90.5 85 64.7
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 2.7e-16 90.1 111 55.9
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 4.6e-16 89.4 85 65.9
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 6.0e-16 89.0 166 43.4
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 1.0e-15 88.2 100 59.0
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 1.3e-15 87.8 84 66.7
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.8e-15 87.4 160 42.5
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.8e-15 87.4 100 60.0
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.8e-15 87.4 85 63.5
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.8e-15 87.4 100 60.0
Potri.008G158500 Populus trichocarpa HOM05D001363 ORTHO05D002212 1.8e-15 87.4 103 58.3
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.8e-15 87.4 100 60.0
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 2.3e-15 87.0 101 58.4
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 2.3e-15 87.0 100 58.0
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 2.3e-15 87.0 166 42.8
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 3.0e-15 86.7 99 59.6
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 3.0e-15 86.7 100 57.0
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 3.0e-15 86.7 91 59.3
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 3.9e-15 86.3 118 50.0
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 3.9e-15 86.3 85 60.0
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 5.1e-15 85.9 91 57.1
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 5.1e-15 85.9 100 59.0
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 5.1e-15 85.9 87 59.8
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 5.1e-15 85.9 87 60.9
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 5.1e-15 85.9 99 59.6
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 6.7e-15 85.5 102 57.8
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 6.7e-15 85.5 114 50.0
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 6.7e-15 85.5 114 50.0
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 6.7e-15 85.5 114 50.0
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 6.7e-15 85.5 84 63.1
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 8.7e-15 85.1 100 58.0
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 8.7e-15 85.1 100 59.0
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 8.7e-15 85.1 100 58.0
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 8.7e-15 85.1 81 61.7
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 8.7e-15 85.1 85 58.8
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 1.1e-14 84.7 124 50.8
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 1.1e-14 84.7 124 51.6
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 1.1e-14 84.7 85 61.2
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 1.1e-14 84.7 114 50.0
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 1.1e-14 84.7 85 62.4
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.1e-14 84.7 85 63.5
Aqoxy7G01707 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 1.5e-14 84.3 163 38.7
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 1.5e-14 84.3 118 50.8
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 1.5e-14 84.3 85 62.4
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 1.5e-14 84.3 86 61.6
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 1.5e-14 84.3 106 55.7
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 1.5e-14 84.3 118 48.3
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.5e-14 84.3 100 58.0
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 1.9e-14 84.0 100 58.0
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 1.9e-14 84.0 100 58.0
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 1.9e-14 84.0 100 58.0
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 1.9e-14 84.0 84 63.1
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 1.9e-14 84.0 87 62.1
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 1.9e-14 84.0 87 59.8
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.9e-14 84.0 85 62.4
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 2.5e-14 83.6 85 61.2
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 2.5e-14 83.6 84 63.1
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 2.5e-14 83.6 84 63.1
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 3.3e-14 83.2 100 58.0
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 3.3e-14 83.2 100 57.0
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 3.3e-14 83.2 86 59.3
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 3.3e-14 83.2 106 52.8
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 4.3e-14 82.8 100 56.0
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 4.3e-14 82.8 158 40.5
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 5.6e-14 82.4 100 57.0
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 5.6e-14 82.4 158 41.1
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 5.6e-14 82.4 99 58.6
Potri.010G081500 Populus trichocarpa HOM05D001363 ORTHO05D002212 5.6e-14 82.4 100 57.0
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 5.6e-14 82.4 81 59.3
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 7.4e-14 82.0 100 56.0
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 9.6e-14 81.6 86 59.3
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 9.6e-14 81.6 84 61.9
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 9.6e-14 81.6 102 55.9
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 1.3e-13 81.3 102 54.9
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 1.3e-13 81.3 92 58.7
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 1.6e-13 80.9 84 60.7
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 1.6e-13 80.9 77 62.3
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 2.1e-13 80.5 92 57.6
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 2.1e-13 80.5 87 57.5
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 2.8e-13 80.1 81 58.0
Sabra10G0061400 Salix brachista HOM05D001363 ORTHO05D002212 2.8e-13 80.1 92 53.3
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 2.8e-13 80.1 99 55.6
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 3.7e-13 79.7 91 58.2
Cc03_g04350 Coffea canephora HOM05D001363 ORTHO05D002212 3.7e-13 79.7 163 41.1
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 3.7e-13 79.7 166 40.4
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 3.7e-13 79.7 100 51.0
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 4.8e-13 79.3 99 56.6
Haze_11238 Corylus avellana HOM05D001363 ORTHO05D002212 6.2e-13 79.0 124 46.8
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 6.2e-13 79.0 102 52.9
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 8.1e-13 78.6 166 42.2
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 1.1e-12 78.2 101 54.5
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 2.4e-12 77.0 76 59.2
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 3.1e-12 76.6 106 54.7
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 3.1e-12 76.6 154 38.3
unitig_32.g11721 Utricularia gibba HOM05D001363 ORTHO05D002212 5.3e-12 75.9 117 43.6
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 9.0e-12 75.1 84 53.6
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.0e-11 73.9 157 37.6
HPP92_020346 Vanilla planifolia HOM05D001363 ORTHO05D002212 2.0e-11 73.9 164 38.4
SHI00528 Sapria himalayana HOM05D001363 ORTHO05D002212 2.6e-11 73.6 104 46.2
Oeu064242.1 Olea europaea HOM05D000700 ORTHO05D000397 3.8e-10 69.7 76 57.9
PSO210G7324 Papaver somniferum HOM05D001363 ORTHO05D002212 8.4e-10 68.6 88 51.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.2e-09 66.2 77 51.9
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 4.2e-09 66.2 98 46.9
EL10Ac3g06502 Beta vulgaris HOM05D001363 ORTHO05D002212 3.5e-08 63.2 134 38.1
Mapoly0108s0001 Marchantia polymorpha HOM05D001363 ORTHO05D002212 4.6e-08 62.8 67 50.7
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 4.6e-08 62.8 67 50.7
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 4.6e-08 62.8 109 37.6
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 4.6e-08 62.8 55 61.8
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.3e-07 61.2 50 66.0
BcaC05g28007 Brassica carinata HOM05D001363 ORTHO05D002212 2.5e-06 57.0 78 47.4


User provided reference genes

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