Gene: Sopen09g031640

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g031640
  • Transcript Identifier Sopen09g031640.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 79991530-79995318 : negative

Gene Family Information

  • ID HOM05D001363
  • #Genes/#Species 458/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g031640.1

Descriptions

  • Description Meiotic recombination protein DMC1 homolog - Glycine max (Soybean), Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. | DISRUPTION OF MEIOTIC CONTROL 1 (DMC1) | FUNCTIONS IN: in 6 functions | INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain , DNA repair Rad51/transcription factor NusA, alpha-helical , ATPase, AAA type, core , Meiotic recombinase Dmc1 , DNA recombination and repair protein, RecA-like , DNA recombination/repair protein RecA, monomer-monomer interface , DNA recombination and repair protein Rad51, C-terminal | BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007131
IEA
InterProreciprocal meiotic recombination
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT3G22880
GO:0051321
ISO
PLAZA Integrative Orthologymeiotic cell cycle AT3G22880
GO:0007130
ISO
PLAZA Integrative Orthologysynaptonemal complex assembly Os12g0143800
GO:0006259
ISO
PLAZA Integrative OrthologyDNA metabolic process AT3G22880

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0003677
IEA
InterProDNA binding
GO:0000150
IEA
InterProDNA strand exchange activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G22880
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding Os12g0143800
GO:0017116
ISO
PLAZA Integrative Orthologysingle-stranded DNA helicase activity Os12g0143800
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding Os12g0143800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR013632 DNA recombination and repair protein Rad51-like, C-terminal
IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical
IPR003593 AAA+ ATPase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR033925 Rad51/DMC1/RadA
IPR011940 Meiotic recombination protein Dmc1
IPR016467 DNA recombination and repair protein, RecA-like
Mapman id Description
13.3.5.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.recombinase (DMC1)