Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1474 Trifolium pratense HOM05D002351 ORTHO05D412205 2.1e-61 238.8 118 100.0
Medtr1g076120 Medicago truncatula HOM05D002351 ORTHO05D002501 8.1e-13 77.4 102 42.2
Cpa.g.sc44.58 Carica papaya HOM05D002351 ORTHO05D002501 6.4e-10 67.8 59 59.3
Rhsim06G0149800 Rhododendron simsii HOM05D002351 ORTHO05D002501 8.4e-10 67.4 91 41.8
Hund02915 Selenicereus undatus HOM05D002351 ORTHO05D002501 1.1e-09 67.0 59 57.6
MELO3C006424.2 Cucumis melo HOM05D002351 ORTHO05D002501 1.4e-09 66.6 97 41.2
CsaV3_3G012090 Cucumis sativus L. HOM05D002351 ORTHO05D002501 2.4e-09 65.9 97 40.2
arahy.Tifrunner.gnm1.ann1.6757N5 Arachis hypogaea HOM05D002351 ORTHO05D002501 3.2e-09 65.5 59 57.6
arahy.Tifrunner.gnm1.ann1.PE31ZG Arachis hypogaea HOM05D002351 ORTHO05D002501 3.2e-09 65.5 59 57.6
arahy.Tifrunner.gnm1.ann1.CP8RLS Arachis hypogaea HOM05D002351 ORTHO05D002501 4.2e-09 65.1 59 57.6
Cc01_g18360 Coffea canephora HOM05D002351 ORTHO05D002501 4.2e-09 65.1 61 54.1
Rhsim01G0264000 Rhododendron simsii HOM05D002351 ORTHO05D002501 4.2e-09 65.1 91 40.7
CiPaw.04G186600 Carya illinoinensis HOM05D002351 ORTHO05D002501 5.5e-09 64.7 97 40.2
Lj5g0011136 Lotus japonicus HOM05D002351 ORTHO05D002501 5.5e-09 64.7 97 40.2
MBI07_g16244_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D002501 5.5e-09 64.7 59 57.6
Nn1g06807 Nelumbo nucifera HOM05D002351 ORTHO05D002501 5.5e-09 64.7 59 54.2
QL02p014536 Quercus lobata HOM05D002351 ORTHO05D002501 5.5e-09 64.7 59 55.9
Glyma.18G183900 Glycine max HOM05D002351 ORTHO05D002501 7.1e-09 64.3 59 55.9
Haze_11380 Corylus avellana HOM05D002351 ORTHO05D002501 9.3e-09 63.9 59 55.9
Nn1g09221 Nelumbo nucifera HOM05D002351 ORTHO05D002501 9.3e-09 63.9 97 38.1
Prupe.1G039500 Prunus persica HOM05D002351 ORTHO05D002501 1.2e-08 63.5 97 40.2
Thecc.04G255300 Theobroma cacao HOM05D002351 ORTHO05D002501 1.2e-08 63.5 97 39.2
EL10Ac5g10400 Beta vulgaris HOM05D002351 ORTHO05D002501 1.6e-08 63.2 100 36.0
ClCG02G016050 Citrullus lanatus HOM05D002351 ORTHO05D002501 1.6e-08 63.2 97 38.1
CsaV3_2G004930 Cucumis sativus L. HOM05D002351 ORTHO05D002501 1.6e-08 63.2 97 38.1
DCAR_018482 Daucus carota HOM05D002351 ORTHO05D002501 1.6e-08 63.2 89 44.9
Lj2C1151G12 Lonicera japonica HOM05D002351 ORTHO05D002501 1.6e-08 63.2 63 50.8
QL06p018004 Quercus lobata HOM05D002351 ORTHO05D002501 1.6e-08 63.2 97 39.2
Solyc06g083890.4 Solanum lycopersicum HOM05D002351 ORTHO05D002501 1.6e-08 63.2 97 42.3
GSVIVG01027813001 Vitis vinifera HOM05D002351 ORTHO05D002501 1.6e-08 63.2 59 55.9
Actinidia09551 Actinidia chinensis HOM05D002351 ORTHO05D002501 2.1e-08 62.8 59 55.9
AUR62011871 Chenopodium quinoa HOM05D002351 ORTHO05D002501 2.1e-08 62.8 61 50.8
AUR62024715 Chenopodium quinoa HOM05D002351 ORTHO05D002501 2.1e-08 62.8 61 50.8
Ca_08675_v3 Cicer arietinum L. HOM05D002351 ORTHO05D002501 2.7e-08 62.4 59 55.9
ClCG05G004310 Citrullus lanatus HOM05D002351 ORTHO05D002501 2.7e-08 62.4 97 38.1
Dinv22408 Davidia involucrata HOM05D002351 ORTHO05D002501 2.7e-08 62.4 59 55.9
MD05G1197300 Malus domestica HOM05D002351 ORTHO05D002501 3.5e-08 62.0 59 55.9
Ca_08701_v3 Cicer arietinum L. HOM05D002351 ORTHO05D002501 4.6e-08 61.6 59 55.9
Haze_24629 Corylus avellana HOM05D002351 ORTHO05D002501 4.6e-08 61.6 62 53.2
Lalb_Chr25g0289971 Lupinus albus HOM05D002351 ORTHO05D002501 4.6e-08 61.6 59 55.9
MD16G1219100 Malus domestica HOM05D002351 ORTHO05D002501 4.6e-08 61.6 97 36.1
RcHm_v2.0_Chr4g0393021 Rosa chinensis HOM05D002351 ORTHO05D002501 4.6e-08 61.6 97 37.1
FAN17G1904 Fragaria x ananassa HOM05D002351 ORTHO05D002501 6.0e-08 61.2 56 55.4
Lalb_Chr01g0019661 Lupinus albus HOM05D002351 ORTHO05D002501 6.0e-08 61.2 59 54.2
Sopen06g035290 Solanum pennellii HOM05D002351 ORTHO05D002501 6.0e-08 61.2 97 41.2
TPR.G4754 Trifolium pratense HOM05D002351 ORTHO05D002501 6.0e-08 61.2 59 55.9
CDE04G1499 Ceratophyllum demersum HOM05D002351 ORTHO05D002501 7.9e-08 60.8 62 51.6
Dinv34625 Davidia involucrata HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 55.9
FvH4_2g21480 Fragaria vesca HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 54.2
FAN24G0740 Fragaria x ananassa HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 54.2
Glyma.07G134400 Glycine max HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 52.5
Lj2C624T4 Lonicera japonica HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 52.5
Sed0025164 Sechium edule HOM05D002351 ORTHO05D002501 7.9e-08 60.8 97 38.1
Sc17g0000650 Simmondsia chinensis HOM05D002351 ORTHO05D002501 7.9e-08 60.8 59 54.2
CSS0041145 Camellia sinensis var. sinensis HOM05D002351 ORTHO05D002501 1.0e-07 60.5 59 52.5
CANSAT01G1751 Cannabis sativa HOM05D002351 ORTHO05D002501 1.0e-07 60.5 59 50.8
Eucgr.B01555 Eucalyptus grandis HOM05D002351 ORTHO05D002501 1.0e-07 60.5 62 56.5
Eucgr.B02550 Eucalyptus grandis HOM05D002351 ORTHO05D002501 1.0e-07 60.5 62 56.5
HanXRQChr09g0267651 Helianthus annuus HOM05D002351 ORTHO05D002501 1.0e-07 60.5 59 59.3
SalBow6G6946 Salvia bowleyana HOM05D002351 ORTHO05D002501 1.0e-07 60.5 59 50.8
unitig_899.g15390 Utricularia gibba HOM05D002351 ORTHO05D002501 1.0e-07 60.5 59 54.2
Ah.11g049740 Amaranthus hybridus HOM05D002351 ORTHO05D002501 1.3e-07 60.1 97 37.1
COL.COLO4_15877 Corchorus olitorius HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 50.8
Migut.N02202 Erythranthe guttata HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 52.5
FvH4_4g03640 Fragaria vesca HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 52.5
FAN12G3702 Fragaria x ananassa HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 52.5
Gohir.A10G111100 Gossypium hirsutum HOM05D002351 ORTHO05D002501 1.3e-07 60.1 97 38.1
MD10G1184000 Malus domestica HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 54.2
Manes.12G032300 Manihot esculenta HOM05D002351 ORTHO05D002501 1.3e-07 60.1 99 36.4
Hund09602 Selenicereus undatus HOM05D002351 ORTHO05D002501 1.3e-07 60.1 59 54.2
Atru.chr5.1687 Acer truncatum HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 54.2
Aqoxy5G00246 Aquilegia oxysepala HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 50.8
Manes.13G034000 Manihot esculenta HOM05D002351 ORTHO05D002501 1.8e-07 59.7 61 49.2
Phvul.006G069800 Phaseolus vulgaris HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 55.9
Prupe.8G223800 Prunus persica HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 54.2
QL06p017953 Quercus lobata HOM05D002351 ORTHO05D002501 1.8e-07 59.7 97 37.1
PGSC0003DMG400020072 Solanum tuberosum HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 59.3
TAR636G1082 Trochodendron aralioides HOM05D002351 ORTHO05D002501 1.8e-07 59.7 59 52.5
Actinidia25787 Actinidia chinensis HOM05D002351 ORTHO05D002501 2.3e-07 59.3 59 54.2
EL10Ac4g07698 Beta vulgaris HOM05D002351 ORTHO05D002501 2.3e-07 59.3 63 41.3
Duzib151G0731 Durio zibethinus HOM05D002351 ORTHO05D002501 2.3e-07 59.3 59 50.8
Thhalv10024881m.g Eutrema salsugineum HOM05D002351 ORTHO05D002501 2.3e-07 59.3 97 38.1
Gorai.011G174300 Gossypium raimondii HOM05D002351 ORTHO05D002501 2.3e-07 59.3 97 36.1
RcHm_v2.0_Chr6g0288131 Rosa chinensis HOM05D002351 ORTHO05D002501 2.3e-07 59.3 59 52.5
MSTRG.17490 Avicennia marina HOM05D002351 ORTHO05D002501 3.0e-07 58.9 59 49.2
ECA232G4398 Erigeron canadensis HOM05D002351 ORTHO05D002501 3.0e-07 58.9 59 57.6
ECA233G2014 Erigeron canadensis HOM05D002351 ORTHO05D002501 3.0e-07 58.9 59 57.6
Gohir.D02G045600 Gossypium hirsutum HOM05D002351 ORTHO05D002501 3.0e-07 58.9 97 36.1
Medtr7g096940 Medicago truncatula HOM05D002351 ORTHO05D002501 3.0e-07 58.9 59 55.9
SGA_v2.0_scaffold510G52613 Striga asiatica HOM05D002351 ORTHO05D002501 3.0e-07 58.9 59 50.8
Ciclev10004803m.g Citrus clementina HOM05D002351 ORTHO05D002501 3.9e-07 58.5 97 38.1
Lsat_1_v5_gn_4_125921 Lactuca sativa HOM05D002351 ORTHO05D002501 3.9e-07 58.5 51 56.9
MBI15_g05557_MAGBIO Magnolia biondii HOM05D014742 ORTHO05D012549 3.9e-07 58.5 111 36.9
Peaxi162Scf00013g01114 Petunia axillaris HOM05D002351 ORTHO05D002501 3.9e-07 58.5 59 57.6
Potri.012G064100 Populus trichocarpa HOM05D002351 ORTHO05D002501 3.9e-07 58.5 59 49.2
Sabra12G0045800 Salix brachista HOM05D002351 ORTHO05D002501 3.9e-07 58.5 59 49.2
SGA_v2.0_scaffold80G25774 Striga asiatica HOM05D002351 ORTHO05D002501 3.9e-07 58.5 59 50.8
unitig_746.g26600 Utricularia gibba HOM05D002351 ORTHO05D002501 3.9e-07 58.5 59 52.5
AL7G13900 Arabidopsis lyrata HOM05D002351 ORTHO05D002501 5.1e-07 58.2 97 36.1
Carub.0002s1150 Capsella rubella HOM05D002351 ORTHO05D002501 5.1e-07 58.2 97 36.1
CARHR057480 Cardamine hirsuta HOM05D002351 ORTHO05D002501 5.1e-07 58.2 59 50.8
MELO3C004305.2 Cucumis melo HOM05D002351 ORTHO05D002501 5.1e-07 58.2 73 46.6
DCAR_007299 Daucus carota HOM05D002351 ORTHO05D002501 5.1e-07 58.2 39 69.2
Thhalv10007322m.g Eutrema salsugineum HOM05D002351 ORTHO05D002501 5.1e-07 58.2 97 37.1
FAN15G0951 Fragaria x ananassa HOM05D002351 ORTHO05D002501 5.1e-07 58.2 59 52.5
FAN20G1607 Fragaria x ananassa HOM05D002351 ORTHO05D002501 5.1e-07 58.2 59 52.5
FAN27G1893 Fragaria x ananassa HOM05D002351 ORTHO05D002501 5.1e-07 58.2 59 52.5
Gohir.A02G039500 Gossypium hirsutum HOM05D002351 ORTHO05D002501 5.1e-07 58.2 96 36.5
Gohir.D10G157000 Gossypium hirsutum HOM05D002351 ORTHO05D002501 5.1e-07 58.2 59 49.2
TWI18G0783 Tripterygium wilfordii HOM05D002351 ORTHO05D002501 5.1e-07 58.2 97 36.1
Aa31LG1G9080 Aethionema arabicum HOM05D002351 ORTHO05D002501 6.7e-07 57.8 59 50.8
arahy.Tifrunner.gnm1.ann1.TV98JP Arachis hypogaea HOM05D002351 ORTHO05D002501 6.7e-07 57.8 108 35.2
CANSAT78G1053 Cannabis sativa HOM05D002351 ORTHO05D002501 6.7e-07 57.8 97 39.2
Duzib212G0548 Durio zibethinus HOM05D002351 ORTHO05D002501 6.7e-07 57.8 96 38.5
HanXRQChr05g0150911 Helianthus annuus HOM05D002351 ORTHO05D002501 6.7e-07 57.8 59 50.8
Potri.015G048200 Populus trichocarpa HOM05D002351 ORTHO05D002501 6.7e-07 57.8 59 49.2
HPP92_020821 Vanilla planifolia HOM05D002351 ORTHO05D002501 6.7e-07 57.8 59 52.5
arahy.Tifrunner.gnm1.ann1.NU732K Arachis hypogaea HOM05D002351 ORTHO05D002501 8.7e-07 57.4 108 35.2
Gorai.005G050300 Gossypium raimondii HOM05D002351 ORTHO05D002501 8.7e-07 57.4 97 35.1
Nitab4.5_0005993g0020 Nicotiana tabacum HOM05D002351 ORTHO05D002501 8.7e-07 57.4 59 55.9
Nitab4.5_0006658g0020 Nicotiana tabacum HOM05D002351 ORTHO05D002501 8.7e-07 57.4 59 55.9
TAR365G0593 Trochodendron aralioides HOM05D002351 ORTHO05D002501 8.7e-07 57.4 59 49.2
Zm00001eb173350 Zea mays HOM05D002351 ORTHO05D002501 8.7e-07 57.4 97 36.1
Zm00001eb261550 Zea mays HOM05D002351 ORTHO05D002501 8.7e-07 57.4 97 36.1
AT4G37120 Arabidopsis thaliana HOM05D002351 ORTHO05D002501 1.1e-06 57.0 97 35.1
SEGI_01744 Sequoiadendron giganteum HOM05D002351 ORTHO05D002501 1.1e-06 57.0 59 47.5
AL2G22710 Arabidopsis lyrata HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 49.2
AT1G65660 Arabidopsis thaliana HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 49.2
CAN.G771.27 Capsicum annuum HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 49.2
Ciclev10019645m.g Citrus clementina HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 50.8
Mapoly0019s0005 Marchantia polymorpha HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 50.8
Sp7g18290 Schrenkiella parvula HOM05D002351 ORTHO05D002501 1.5e-06 56.6 59 49.2
CiPaw.03G264100 Carya illinoinensis HOM05D002351 ORTHO05D002501 1.9e-06 56.2 97 35.1
Lj1g0017354 Lotus japonicus HOM05D002351 ORTHO05D002501 1.9e-06 56.2 59 52.5
Oeu027307.1 Olea europaea HOM05D002351 ORTHO05D002501 1.9e-06 56.2 59 47.5
TWI12G0014 Tripterygium wilfordii HOM05D002351 ORTHO05D002501 1.9e-06 56.2 59 50.8
Os08g0127700 Oryza sativa ssp. japonica HOM05D002351 ORTHO05D002501 2.5e-06 55.8 59 50.8
PGR102G2193 Punica granatum HOM05D002351 ORTHO05D002501 2.5e-06 55.8 59 47.5
BraA08t35617Z Brassica rapa HOM05D002351 ORTHO05D002501 3.3e-06 55.5 59 49.2
THA.LOC104801152 Tarenaya hassleriana HOM05D002351 ORTHO05D002501 3.3e-06 55.5 97 35.1
ATR0736G013 Amborella trichopoda HOM05D002351 ORTHO05D002501 4.3e-06 55.1 58 46.6
BcaC07g36937 Brassica carinata HOM05D002351 ORTHO05D002501 4.3e-06 55.1 59 49.2
BolC8t46880H Brassica oleracea HOM05D002351 ORTHO05D002501 4.3e-06 55.1 59 49.2
COL.COLO4_11468 Corchorus olitorius HOM05D002351 ORTHO05D002501 4.3e-06 55.1 59 49.2
MBI18_g18529_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D002501 4.3e-06 55.1 49 51.0
Solyc09g072570.3 Solanum lycopersicum HOM05D002351 ORTHO05D002501 4.3e-06 55.1 59 49.2
Sopen09g028380 Solanum pennellii HOM05D002351 ORTHO05D002501 4.3e-06 55.1 59 49.2
A01p31760 Brassica napus HOM05D002351 ORTHO05D002501 7.4e-06 54.3 60 48.3
A10p02420 Brassica napus HOM05D002351 ORTHO05D002501 7.4e-06 54.3 59 47.5
BraA01t03301Z Brassica rapa HOM05D002351 ORTHO05D002501 7.4e-06 54.3 60 48.3
BraA10t42511Z Brassica rapa HOM05D002351 ORTHO05D002501 7.4e-06 54.3 59 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1446 Anthoceros agrestis HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 52.5
BcaC05g24491 Brassica carinata HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 47.5
A08p37170 Brassica napus HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 47.5
C05p02240 Brassica napus HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 47.5
C08p00820 Brassica napus HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 47.5
BolC5t28999H Brassica oleracea HOM05D002351 ORTHO05D002501 9.6e-06 53.9 59 47.5
Thecc.09G105100 Theobroma cacao HOM05D002351 ORTHO05D002501 9.6e-06 53.9 116 33.6


User provided reference genes

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