Gene: AT4G37120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G37120
  • Transcript Identifier AT4G37120.1
  • Gene Type Coding gene
  • Location Chr4 : 17486679-17489123 : positive

Gene Family Information

  • ID HOM05D002351
  • #Genes/#Species 289/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G37120.1
  • symbol SMP2
  • full_name SWELLMAP 2
  • uniprot O23174

Descriptions

  • Description Pre-mRNA splicing Prp18-interacting factor
  • Computational description SWELLMAP 2 (SMP2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IBA
TAS
Gene OntologyRNA splicing1 2
GO:0000398
IEA
Gene OntologymRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008284
IGI
Gene Ontologypositive regulation of cell population proliferation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030628
IEA
Gene Ontologypre-mRNA 3'-splice site binding
GO:0030628
IEA
InterPropre-mRNA 3'-splice site binding
GO:0000386
IEA
Gene Ontologysecond spliceosomal transesterification activity
GO:0000386
IEA
InterProsecond spliceosomal transesterification activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003727
TAS
Gene Ontologysingle-stranded RNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IBA
Gene Ontologyspliceosomal complex2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021715 Pre-mRNA-splicing factor SLU7 domain
IPR039974 Pre-mRNA-splicing factor SLU7
Mapman id Description
16.2.6.9 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SLU7)