Gene: Sopen06g035290
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g035290
- Transcript Identifier Sopen06g035290.1
- Gene Type Coding gene
- Location Spenn-ch06 : 60176846-60182874 : negative
Gene Family Information
- ID HOM05D002351
- #Genes/#Species 289/99
- Phylogenetic origin
- ID ORTHO05D002501
- #Genes/#Species 284/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g035290.1
Descriptions
- Description Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells. | SWELLMAP 1 (SMP1) | CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type , Pre-mRNA splicing Prp18-interacting factor | BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0008380 | ISO | PLAZA Integrative Orthology | RNA splicing | AT1G65660 |
| GO:0008284 | ISO | PLAZA Integrative Orthology | positive regulation of cell population proliferation | AT1G65660 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000386 | IEA | InterPro | second spliceosomal transesterification activity | |
| GO:0030628 | IEA | InterPro | pre-mRNA 3'-splice site binding | |
| GO:0003727 | ISO | PLAZA Integrative Orthology | single-stranded RNA binding | AT1G65660 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.6.9 | RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SLU7) |