Gene: COL.COLO4_11468

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_11468
  • Transcript Identifier COL.rna10261
  • Gene Type Coding gene
  • Location AWUE01014705.1 : 9654-11195 : positive

Gene Family Information

  • ID HOM05D002351
  • #Genes/#Species 289/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna10261
  • GenBank OMP01914.1
  • id gene11440
  • gene_name COLO4_11468
  • uniprot A0A1R3K4A7

Descriptions

  • Description Pre-mRNA splicing Prp18-interacting factor
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000386
IEA
GOA Databasesecond spliceosomal transesterification activity
GO:0000386
IEA
InterProsecond spliceosomal transesterification activity
GO:0030628
IEA
GOA Databasepre-mRNA 3'-splice site binding
GO:0030628
IEA
InterPropre-mRNA 3'-splice site binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR021715 Pre-mRNA-splicing factor SLU7 domain
IPR039974 Pre-mRNA-splicing factor SLU7
Mapman id Description
16.2.6.9 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SLU7)