Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1878 Trochodendron aralioides HOM05D000250 ORTHO05D004181 3.6e-55 218.0 109 100.0
TAR623G1522 Trochodendron aralioides HOM05D000250 ORTHO05D004181 1.2e-31 139.8 145 57.2
Dinv37360 Davidia involucrata HOM05D000250 ORTHO05D004181 1.6e-31 139.4 143 57.3
Actinidia28938 Actinidia chinensis HOM05D000250 ORTHO05D004181 2.7e-31 138.7 143 56.6
CSS0023402 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D004181 4.0e-30 134.8 145 55.2
MELO3C025051.2 Cucumis melo HOM05D000250 ORTHO05D004181 4.0e-30 134.8 144 54.9
CsaV3_5G020030 Cucumis sativus L. HOM05D000250 ORTHO05D004181 4.0e-30 134.8 144 54.9
CSS0005967 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D004181 5.2e-30 134.4 145 54.5
CSS0025044 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D004181 2.0e-29 132.5 145 54.5
ClCG01G008190 Citrullus lanatus HOM05D000250 ORTHO05D004181 2.6e-29 132.1 144 52.8
Eucgr.K02417 Eucalyptus grandis HOM05D000250 ORTHO05D004181 4.4e-29 131.3 144 53.5
Nn6g35155 Nelumbo nucifera HOM05D000250 ORTHO05D004181 4.4e-29 131.3 144 52.8
Haze_19481 Corylus avellana HOM05D000250 ORTHO05D004181 5.7e-29 131.0 142 53.5
ClCG10G019620 Citrullus lanatus HOM05D000250 ORTHO05D004181 7.5e-29 130.6 142 52.1
MELO3C009410.2 Cucumis melo HOM05D000250 ORTHO05D004181 7.5e-29 130.6 144 52.8
vmacro07350 Vaccinium macrocarpon HOM05D000250 ORTHO05D004181 7.5e-29 130.6 143 52.4
MSTRG.19210 Avicennia marina HOM05D000250 ORTHO05D004181 9.8e-29 130.2 142 52.1
Duzib106G0420 Durio zibethinus HOM05D000250 ORTHO05D004181 9.8e-29 130.2 144 52.8
Cc06_g04810 Coffea canephora HOM05D000250 ORTHO05D004181 1.3e-28 129.8 142 52.8
PGR004G0603 Punica granatum HOM05D000250 ORTHO05D004181 1.3e-28 129.8 144 52.8
Thecc.05G075900 Theobroma cacao HOM05D000250 ORTHO05D004181 1.7e-28 129.4 144 52.1
Cfa016484 Carpinus fangiana HOM05D000250 ORTHO05D004181 2.2e-28 129.0 144 51.4
CsaV3_3G036440 Cucumis sativus L. HOM05D000250 ORTHO05D004181 2.8e-28 128.6 144 52.1
Gohir.D04G106700 Gossypium hirsutum HOM05D000250 ORTHO05D004181 2.8e-28 128.6 144 52.8
vmacro08806 Vaccinium macrocarpon HOM05D000250 ORTHO05D004181 2.8e-28 128.6 143 53.1
CSS0048889 Camellia sinensis var. sinensis HOM05D000250 ORTHO05D004181 3.7e-28 128.3 143 51.7
Gohir.A04G068100 Gossypium hirsutum HOM05D000250 ORTHO05D004181 3.7e-28 128.3 144 52.1
Gorai.009G410800 Gossypium raimondii HOM05D000250 ORTHO05D004181 3.7e-28 128.3 144 52.1
Sed0013470 Sechium edule HOM05D000250 ORTHO05D004181 3.7e-28 128.3 144 51.4
CiPaw.09G005400 Carya illinoinensis HOM05D000250 ORTHO05D004181 4.8e-28 127.9 144 50.7
Cfa001927 Carpinus fangiana HOM05D000250 ORTHO05D004181 6.3e-28 127.5 144 52.1
Ciclev10014975m.g Citrus clementina HOM05D000250 ORTHO05D004181 6.3e-28 127.5 144 51.4
Duzib128G0086 Durio zibethinus HOM05D000250 ORTHO05D004181 6.3e-28 127.5 144 52.1
SGA_v2.0_scaffold40G15446 Striga asiatica HOM05D000250 ORTHO05D004181 6.3e-28 127.5 142 52.1
Ca_19494_v3 Cicer arietinum L. HOM05D000250 ORTHO05D004181 8.3e-28 127.1 142 52.1
PSO541G3626 Papaver somniferum HOM05D000250 ORTHO05D004181 8.3e-28 127.1 145 50.3
Haze_16614 Corylus avellana HOM05D000250 ORTHO05D004181 1.1e-27 126.7 144 51.4
Oeu017001.1 Olea europaea HOM05D000250 ORTHO05D004181 1.1e-27 126.7 142 52.8
Peaxi162Scf00146g00111 Petunia axillaris HOM05D000250 ORTHO05D004181 1.1e-27 126.7 143 51.0
Nitab4.5_0001509g0080 Nicotiana tabacum HOM05D000250 ORTHO05D004181 1.4e-27 126.3 143 51.7
CAN.G729.2 Capsicum annuum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 145 51.0
Cpa.g.sc5.123 Carica papaya HOM05D000250 ORTHO05D004181 1.8e-27 125.9 144 51.4
Lj1C159G2 Lonicera japonica HOM05D000250 ORTHO05D004181 1.8e-27 125.9 142 51.4
Nitab4.5_0001746g0020 Nicotiana tabacum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.0
PSO675G2286 Papaver somniferum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 145 49.7
Phvul.004G033700 Phaseolus vulgaris HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 52.4
Solyc04g082790.4 Solanum lycopersicum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.7
Solyc10g085790.2 Solanum lycopersicum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.7
Sopen04g036430 Solanum pennellii HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.7
Sopen10g035180 Solanum pennellii HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.7
PGSC0003DMG400008589 Solanum tuberosum HOM05D000250 ORTHO05D004181 1.8e-27 125.9 143 51.7
CANSAT21G1839 Cannabis sativa HOM05D000250 ORTHO05D004181 2.4e-27 125.6 144 50.0
HanXRQChr16g0517961 Helianthus annuus HOM05D000250 ORTHO05D004181 2.4e-27 125.6 142 51.4
Lalb_Chr21g0315281 Lupinus albus HOM05D000250 ORTHO05D004181 2.4e-27 125.6 142 50.7
Lsat_1_v5_gn_1_52741 Lactuca sativa HOM05D000250 ORTHO05D004181 3.1e-27 125.2 142 51.4
VMungo0464G1665 Vigna mungo HOM05D000250 ORTHO05D004181 3.1e-27 125.2 143 51.7
Duzib093G1671 Durio zibethinus HOM05D000250 ORTHO05D004181 4.1e-27 124.8 144 50.7
Nitab4.5_0005559g0050 Nicotiana tabacum HOM05D000250 ORTHO05D004181 5.4e-27 124.4 143 51.0
Actinidia26631 Actinidia chinensis HOM05D000250 ORTHO05D004181 7.0e-27 124.0 139 51.8
ECA248G2295 Erigeron canadensis HOM05D000250 ORTHO05D004181 7.0e-27 124.0 142 50.7
Nitab4.5_0000725g0010 Nicotiana tabacum HOM05D000250 ORTHO05D004181 7.0e-27 124.0 143 50.3
Medtr1g061970 Medicago truncatula HOM05D000250 ORTHO05D004181 1.2e-26 123.2 138 52.2
Lj5g0014877 Lotus japonicus HOM05D000250 ORTHO05D004181 1.6e-26 122.9 144 50.0
arahy.Tifrunner.gnm1.ann1.45ESD9 Arachis hypogaea HOM05D000250 ORTHO05D004181 2.0e-26 122.5 144 50.0
arahy.Tifrunner.gnm1.ann1.N9AH7W Arachis hypogaea HOM05D000250 ORTHO05D004181 2.0e-26 122.5 144 50.0
CDE06G0451 Ceratophyllum demersum HOM05D000250 ORTHO05D004181 2.7e-26 122.1 143 48.3
Migut.J00479 Erythranthe guttata HOM05D000250 ORTHO05D004181 2.7e-26 122.1 142 49.3
Psat6g077760 Pisum sativum HOM05D000250 ORTHO05D004181 2.7e-26 122.1 138 51.4
Rhsim03G0085200 Rhododendron simsii HOM05D000250 ORTHO05D004181 2.7e-26 122.1 143 49.7
Sabra06G0093600 Salix brachista HOM05D000250 ORTHO05D004181 2.7e-26 122.1 138 52.2
Lalb_Chr02g0155341 Lupinus albus HOM05D000250 ORTHO05D004181 3.5e-26 121.7 142 49.3
TPR.G9904 Trifolium pratense HOM05D000250 ORTHO05D004181 3.5e-26 121.7 138 50.0
CDE02G4375 Ceratophyllum demersum HOM05D000250 ORTHO05D004181 5.9e-26 120.9 143 47.6
Manes.09G049118 Manihot esculenta HOM05D000250 ORTHO05D004181 5.9e-26 120.9 138 52.2
GSVIVG01033721001 Vitis vinifera HOM05D000250 ORTHO05D004181 5.9e-26 120.9 144 49.3
Rhsim04G0138700 Rhododendron simsii HOM05D000250 ORTHO05D004181 7.7e-26 120.6 156 48.1
CARHR162960 Cardamine hirsuta HOM05D000250 ORTHO05D004181 1.0e-25 120.2 143 49.0
arahy.Tifrunner.gnm1.ann1.583UUH Arachis hypogaea HOM05D000250 ORTHO05D004181 1.3e-25 119.8 144 50.0
arahy.Tifrunner.gnm1.ann1.GLS0MP Arachis hypogaea HOM05D000250 ORTHO05D004181 1.3e-25 119.8 144 50.0
Peaxi162Scf00066g00115 Petunia axillaris HOM05D000250 ORTHO05D004181 1.3e-25 119.8 142 50.7
QL07p041361 Quercus lobata HOM05D000250 ORTHO05D004181 1.3e-25 119.8 138 50.0
arahy.Tifrunner.gnm1.ann1.PKWB63 Arachis hypogaea HOM05D000250 ORTHO05D004181 1.7e-25 119.4 144 50.0
Manes.08G015700 Manihot esculenta HOM05D000250 ORTHO05D004181 2.9e-25 118.6 138 52.2
RcHm_v2.0_Chr3g0471391 Rosa chinensis HOM05D000250 ORTHO05D004181 3.8e-25 118.2 145 49.0
Sc05g0002840 Simmondsia chinensis HOM05D000250 ORTHO05D004181 5.0e-25 117.9 146 47.9
THA.LOC104805142 Tarenaya hassleriana HOM05D000250 ORTHO05D004181 5.0e-25 117.9 142 47.9
Aa31LG10G8280 Aethionema arabicum HOM05D000250 ORTHO05D004181 6.5e-25 117.5 142 47.9
Hund12418 Selenicereus undatus HOM05D000250 ORTHO05D004181 6.5e-25 117.5 146 48.6
Glyma.18G155900 Glycine max HOM05D000250 ORTHO05D004181 8.6e-25 117.1 137 50.4
Potri.006G119000 Populus trichocarpa HOM05D000250 ORTHO05D004181 8.6e-25 117.1 138 50.7
Prupe.7G122600 Prunus persica HOM05D000250 ORTHO05D004181 8.6e-25 117.1 144 48.6
ECA236G4979 Erigeron canadensis HOM05D000250 ORTHO05D004181 1.9e-24 115.9 141 47.5
MD12G1102600 Malus domestica HOM05D000250 ORTHO05D004181 1.9e-24 115.9 138 50.0
unitig_27.g25390 Utricularia gibba HOM05D000250 ORTHO05D004181 1.9e-24 115.9 142 47.2
BcaB02g08536 Brassica carinata HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
BcaC02g09183 Brassica carinata HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
A04p06270 Brassica napus HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
C04p39780 Brassica napus HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
BolC4t25550H Brassica oleracea HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
BraA04t16332Z Brassica rapa HOM05D000250 ORTHO05D004181 2.5e-24 115.5 141 47.5
MD14G1096800 Malus domestica HOM05D000250 ORTHO05D004181 2.5e-24 115.5 138 48.6
Atru.chr7.1008 Acer truncatum HOM05D000250 ORTHO05D004181 3.3e-24 115.2 138 49.3
BcaC08g44621 Brassica carinata HOM05D000250 ORTHO05D004181 3.3e-24 115.2 143 47.6
C06p20930 Brassica napus HOM05D000250 ORTHO05D004181 3.3e-24 115.2 143 47.6
BolC6t37281H Brassica oleracea HOM05D000250 ORTHO05D004181 3.3e-24 115.2 143 47.6
Glyma.19G027600 Glycine max HOM05D000250 ORTHO05D004181 3.3e-24 115.2 137 49.6
Aqoxy7G01590 Aquilegia oxysepala HOM05D000250 ORTHO05D004181 4.2e-24 114.8 136 50.7
Carub.0005s1964 Capsella rubella HOM05D000250 ORTHO05D004181 4.2e-24 114.8 143 46.9
DCAR_015018 Daucus carota HOM05D000250 ORTHO05D004181 4.2e-24 114.8 140 49.3
BraA07t29825Z Brassica rapa HOM05D000250 ORTHO05D004181 5.5e-24 114.4 141 47.5
HanXRQChr11g0350701 Helianthus annuus HOM05D000250 ORTHO05D004181 5.5e-24 114.4 139 48.2
PSO170G2222 Papaver somniferum HOM05D000250 ORTHO05D004181 5.5e-24 114.4 145 45.5
AUR62040191 Chenopodium quinoa HOM05D000250 ORTHO05D004181 9.5e-24 113.6 146 44.5
Aqoxy5G04276 Aquilegia oxysepala HOM05D000250 ORTHO05D004181 1.2e-23 113.2 133 52.6
A07p21380 Brassica napus HOM05D000250 ORTHO05D004181 1.2e-23 113.2 141 46.8
AL5G33990 Arabidopsis lyrata HOM05D000250 ORTHO05D004181 1.6e-23 112.8 142 47.2
Gohir.D10G248500 Gossypium hirsutum HOM05D000250 ORTHO05D004181 1.6e-23 112.8 145 49.0
Gorai.011G288300 Gossypium raimondii HOM05D000250 ORTHO05D004181 1.6e-23 112.8 145 49.0
Sp5g09210 Schrenkiella parvula HOM05D000250 ORTHO05D004181 1.6e-23 112.8 141 46.1
EL10Ac7g16720 Beta vulgaris HOM05D000250 ORTHO05D004181 2.1e-23 112.5 146 46.6
AUR62042698 Chenopodium quinoa HOM05D000250 ORTHO05D004181 2.1e-23 112.5 146 45.2
FvH4_6g17280 Fragaria vesca HOM05D000250 ORTHO05D004181 4.7e-23 111.3 139 47.5
CBR_g40739 Chara braunii HOM05D000250 ORTHO05D004181 6.1e-23 110.9 142 46.5
Gohir.A10G236700 Gossypium hirsutum HOM05D000250 ORTHO05D004181 6.1e-23 110.9 145 47.6
Carub.0002s1411 Capsella rubella HOM05D000250 ORTHO05D004181 8.0e-23 110.5 141 43.3
COL.COLO4_22258 Corchorus olitorius HOM05D000250 ORTHO05D004181 1.4e-22 109.8 109 59.6
TWI53G1466 Tripterygium wilfordii HOM05D000250 ORTHO05D004181 1.8e-22 109.4 140 47.9
SEGI_06122 Sequoiadendron giganteum HOM05D000250 ORTHO05D004181 2.3e-22 109.0 140 45.0
TWI74G0974 Tripterygium wilfordii HOM05D000250 ORTHO05D004181 2.3e-22 109.0 140 45.7
Gohir.D07G008399 Gossypium hirsutum HOM05D000250 ORTHO05D004181 8.9e-22 107.1 138 47.8
Gorai.001G008400 Gossypium raimondii HOM05D000250 ORTHO05D004181 8.9e-22 107.1 138 47.8
Thhalv10010317m.g Eutrema salsugineum HOM05D000250 ORTHO05D004181 1.2e-21 106.7 141 45.4
Zm00001eb004400 Zea mays HOM05D000250 ORTHO05D004181 1.2e-21 106.7 143 45.5
RcHm_v2.0_Chr3g0471321 Rosa chinensis HOM05D000250 ORTHO05D004181 5.7e-21 104.4 138 45.7
AT3G53110 Arabidopsis thaliana HOM05D000250 ORTHO05D004181 7.5e-21 104.0 142 45.8
Os03g0158200 Oryza sativa ssp. japonica HOM05D000250 ORTHO05D004181 9.8e-21 103.6 143 43.4
Mapoly0035s0045 Marchantia polymorpha HOM05D000250 ORTHO05D004181 1.7e-20 102.8 142 44.4
Medtr4g049910 Medicago truncatula HOM05D000250 ORTHO05D004181 3.7e-20 101.7 136 45.6
Pp3c2_24110 Physcomitrium patens HOM05D000250 ORTHO05D004181 1.4e-19 99.8 142 43.7
Pp3c7_14910 Physcomitrium patens HOM05D000250 ORTHO05D004181 3.1e-19 98.6 142 43.7
RcHm_v2.0_Chr3g0471361 Rosa chinensis HOM05D000250 ORTHO05D004181 5.0e-17 91.3 117 47.9
AagrBONN_evm.TU.Sc2ySwM_228.350 Anthoceros agrestis HOM05D000250 ORTHO05D004181 1.9e-16 89.4 140 38.6
SalBow3G4501 Salvia bowleyana HOM05D000250 ORTHO05D004181 7.3e-16 87.4 97 49.5
AagrBONN_evm.TU.Sc2ySwM_228.297 Anthoceros agrestis HOM05D000250 ORTHO05D004181 9.5e-16 87.0 140 37.9
Aa31LG2G16590 Aethionema arabicum HOM05D000250 ORTHO05D004181 1.6e-15 86.3 136 42.6
PRCOL_00004027 Prasinoderma coloniale HOM05D000250 ORTHO05D004181 1.6e-15 86.3 141 41.8
Cre06.g306850 Chlamydomonas reinhardtii HOM05D000250 ORTHO05D004181 2.8e-15 85.5 142 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2070 Anthoceros agrestis HOM05D000513 ORTHO05D005786 4.7e-15 84.7 97 46.4
HanXRQChr14g0461351 Helianthus annuus HOM05D000250 ORTHO05D004181 4.7e-15 84.7 135 39.3
FAN09G1324 Fragaria x ananassa HOM05D000250 ORTHO05D004181 1.0e-14 83.6 116 44.8
Sed0011256 Sechium edule HOM05D000250 ORTHO05D004181 1.8e-14 82.8 65 63.1
FAN14G5924 Fragaria x ananassa HOM05D000250 ORTHO05D004181 4.0e-14 81.6 102 45.1
FAN02G4584 Fragaria x ananassa HOM05D000250 ORTHO05D004181 5.2e-14 81.3 65 60.0
FAN05G1798 Fragaria x ananassa HOM05D000250 ORTHO05D004181 5.2e-14 81.3 65 60.0
FAN05G4596 Fragaria x ananassa HOM05D000250 ORTHO05D004181 5.2e-14 81.3 65 60.0
Actinidia31308 Actinidia chinensis HOM05D000250 ORTHO05D004181 6.8e-14 80.9 75 58.7
RcHm_v2.0_Chr3g0471311 Rosa chinensis HOM05D000250 ORTHO05D004181 6.8e-14 80.9 65 60.0
HanXRQChr14g0460531 Helianthus annuus HOM05D000250 ORTHO05D004181 1.2e-13 80.1 135 40.7
ATR0824G239 Amborella trichopoda HOM05D000250 ORTHO05D004181 3.4e-13 78.6 97 43.3
FvH4_6g17230 Fragaria vesca HOM05D000250 ORTHO05D004181 5.8e-13 77.8 65 60.0
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 5.8e-13 77.8 65 60.0
MCO11G217 Micromonas commoda HOM05D000250 ORTHO05D004181 9.8e-13 77.0 65 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1180 Anthoceros agrestis HOM05D000250 ORTHO05D004181 1.3e-12 76.6 88 50.0
SMO332G0004 Selaginella moellendorffii HOM05D000250 ORTHO05D004181 4.1e-11 71.6 97 37.1
SMO334G0040 Selaginella moellendorffii HOM05D000250 ORTHO05D004181 4.1e-11 71.6 97 37.1
SMO334G0107 Selaginella moellendorffii HOM05D000250 ORTHO05D004181 4.1e-11 71.6 97 37.1
Thecc.01G141700 Theobroma cacao HOM05D000250 ORTHO05D004181 9.2e-11 70.5 53 67.9
Prupe.3G009100 Prunus persica HOM05D000250 ORTHO05D004181 3.5e-10 68.6 103 42.7
SGA_v2.0_scaffold657G53381 Striga asiatica HOM05D000250 ORTHO05D004181 3.9e-09 65.1 50 64.0
Hma1.2p1_0174F.1_g076760 Hydrangea macrophylla HOM05D004205 ORTHO05D004977 5.0e-09 64.7 106 40.6
Lalb_Chr06g0172001 Lupinus albus HOM05D000250 ORTHO05D004181 5.0e-09 64.7 51 60.8
Haze_20733 Corylus avellana HOM05D000250 ORTHO05D004181 9.5e-08 60.5 53 58.5
Haze_20731 Corylus avellana HOM05D000250 ORTHO05D164817 2.8e-07 58.9 45 62.2
Lalb_Chr06g0172011 Lupinus albus HOM05D000250 ORTHO05D004181 1.8e-06 56.2 67 46.3
Hma1.2p1_0564F.1_g179160 Hydrangea macrophylla HOM05D000250 ORTHO05D004181 3.1e-06 55.5 50 58.0


User provided reference genes

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