Gene: Sopen10g035180

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g035180
  • Transcript Identifier Sopen10g035180.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 81825557-81830550 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g035180.1

Descriptions

  • Description Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. | LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4 (LOS4) | FUNCTIONS IN: RNA helicase activity, RNA-dependent ATPase activity, ATP-dependent helicase activity | INVOLVED IN: poly(A) mRNA export from nucleus, response to cold, response to heat, response to abscisic acid stimulus | LOCATED IN: nuclear envelope, plasma membrane, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53110
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc10g085790.2
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G53110
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G53110
GO:0016973
ISO
PLAZA Integrative Orthologypoly(A)+ mRNA export from nucleus AT3G53110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc10g085790.2
GO:0008186
ISO
PLAZA Integrative OrthologyATPase, acting on RNA AT3G53110
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53110

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT3G53110
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G53110
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G53110

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.10.3.1 RNA processing.messenger ribonucleoparticle (mRNP) export.mRNP remodeling.ATP-dependent helicase (DBP5/LOS4)