Gene: SGA_v2.0_scaffold40G15446

General Information

Structural Information

  • Species Striga asiatica
  • Gene Identifier SGA_v2.0_scaffold40G15446
  • Transcript Identifier SGA_v2.0_scaffold40T15446
  • Gene Type Coding gene
  • Location scaffold40 : 503967-508123 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

Descriptions

  • product RNA helicase-like protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53110
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc04g082790.4
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G53110
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G53110
GO:0016973
ISO
PLAZA Integrative Orthologypoly(A)+ mRNA export from nucleus AT3G53110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc04g082790.4
GO:0008186
ISO
PLAZA Integrative OrthologyATPase, acting on RNA AT3G53110
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53110

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT3G53110
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G53110
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G53110

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011545 DEAD/DEAH box helicase domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
16.10.3.1 RNA processing.messenger ribonucleoparticle (mRNP) export.mRNP remodeling.ATP-dependent helicase (DBP5/LOS4)