Gene: Solyc10g085790.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g085790.2
  • Transcript Identifier Solyc10g085790.2.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 64022738-64027745 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g085790.2.1
  • uniprot A0A3Q7JGX3
  • gene_id Solyc10g085790

Descriptions

  • Description RNA helicase DEAD34
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT3G53110
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G53110
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53110
GO:0016973
IBA
GOA Databasepoly(A)+ mRNA export from nucleus
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G53110
GO:0008186
ISO
PLAZA Integrative OrthologyATPase, acting on RNA AT3G53110
GO:0003724
IBA
IEA
GOA DatabaseRNA helicase activity
GO:0003724
IDA
Gene OntologyRNA helicase activity1
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT3G53110
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G53110
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT3G53110
GO:0010494
IBA
GOA Databasecytoplasmic stress granule

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
Mapman id Description
16.10.3.1 RNA processing.messenger ribonucleoparticle (mRNP) export.mRNP remodeling.ATP-dependent helicase (DBP5/LOS4)