Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3362 Trochodendron aralioides HOM05D001674 ORTHO05D008374 3.8e-114 414.8 208 100.0
TAR371G1295 Trochodendron aralioides HOM05D001674 ORTHO05D008374 6.2e-40 168.3 262 43.1
Nn4g23350 Nelumbo nucifera HOM05D001674 ORTHO05D008374 1.2e-30 137.5 262 37.4
PSO017G4168 Papaver somniferum HOM05D001674 ORTHO05D008374 2.1e-27 126.7 243 41.2
vmacro17583 Vaccinium macrocarpon HOM05D001674 ORTHO05D008374 3.9e-26 122.5 277 36.8
Rhsim08G0149800 Rhododendron simsii HOM05D000001 ORTHO05D008374 6.6e-26 121.7 275 35.6
GSVIVG01007916001 Vitis vinifera HOM05D001674 ORTHO05D008374 2.5e-25 119.8 271 37.3
Dinv38776 Davidia involucrata HOM05D001674 ORTHO05D008374 1.6e-24 117.1 271 35.8
Lj9C469T4 Lonicera japonica HOM05D001674 ORTHO05D008374 2.1e-24 116.7 267 36.7
Atru.chr9.282 Acer truncatum HOM05D001674 ORTHO05D008374 4.7e-24 115.5 262 35.9
Aqoxy3G00457 Aquilegia oxysepala HOM05D001674 ORTHO05D008374 4.7e-24 115.5 246 38.2
Ciclev10018579m.g Citrus clementina HOM05D001674 ORTHO05D008374 4.7e-24 115.5 268 36.2
Prupe.5G200300 Prunus persica HOM05D001674 ORTHO05D008374 6.2e-24 115.2 276 35.9
Manes.06G087800 Manihot esculenta HOM05D001674 ORTHO05D008374 1.1e-23 114.4 271 35.8
Cfa019293 Carpinus fangiana HOM05D001674 ORTHO05D008374 1.4e-23 114.0 274 35.8
Potri.012G067000 Populus trichocarpa HOM05D001674 ORTHO05D008374 1.4e-23 114.0 273 34.8
FvH4_5g14341 Fragaria vesca HOM05D001674 ORTHO05D008374 4.0e-23 112.5 275 35.6
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 4.0e-23 112.5 275 35.6
Haze_07675 Corylus avellana HOM05D001674 ORTHO05D008374 5.3e-23 112.1 274 35.4
DCAR_026018 Daucus carota HOM05D001674 ORTHO05D008374 5.3e-23 112.1 265 34.3
Oeu032215.1 Olea europaea HOM05D001674 ORTHO05D008374 6.9e-23 111.7 267 35.2
Migut.D01671 Erythranthe guttata HOM05D001674 ORTHO05D008374 9.0e-23 111.3 269 34.2
RcHm_v2.0_Chr7g0182391 Rosa chinensis HOM05D001674 ORTHO05D008374 9.0e-23 111.3 272 34.9
MD14G1208200 Malus domestica HOM05D001674 ORTHO05D008374 1.2e-22 110.9 275 33.5
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 1.5e-22 110.5 275 34.5
Lalb_Chr22g0355251 Lupinus albus HOM05D001674 ORTHO05D008374 2.6e-22 109.8 266 35.0
Sabra12G0048100 Salix brachista HOM05D001674 ORTHO05D008374 2.6e-22 109.8 272 34.2
CsaV3_1G002690 Cucumis sativus L. HOM05D001674 ORTHO05D008374 3.4e-22 109.4 269 34.9
TWI15G0866 Tripterygium wilfordii HOM05D001674 ORTHO05D008374 5.8e-22 108.6 272 35.7
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 9.9e-22 107.8 276 34.1
CDE04G0389 Ceratophyllum demersum HOM05D001674 ORTHO05D008374 1.7e-21 107.1 82 63.4
arahy.Tifrunner.gnm1.ann1.1X400K Arachis hypogaea HOM05D001674 ORTHO05D008374 4.9e-21 105.5 54 92.6
arahy.Tifrunner.gnm1.ann1.D3EHI2 Arachis hypogaea HOM05D001674 ORTHO05D008374 4.9e-21 105.5 54 92.6
PGR083G1883 Punica granatum HOM05D001674 ORTHO05D008374 4.9e-21 105.5 274 33.2
SalBow7G3861 Salvia bowleyana HOM05D001674 ORTHO05D008374 6.4e-21 105.1 54 92.6
ATR0064G032 Amborella trichopoda HOM05D001674 ORTHO05D008374 8.4e-21 104.8 258 34.1
MSTRG.9601 Avicennia marina HOM05D001674 ORTHO05D008374 8.4e-21 104.8 270 34.1
HanXRQChr14g0426861 Helianthus annuus HOM05D001674 ORTHO05D008374 1.1e-20 104.4 79 73.4
ClCG06G015870 Citrullus lanatus HOM05D001674 ORTHO05D008374 1.4e-20 104.0 269 34.2
THA.LOC104818327 Tarenaya hassleriana HOM05D001674 ORTHO05D008374 1.4e-20 104.0 54 92.6
Cc00_g02240 Coffea canephora HOM05D001674 ORTHO05D008374 1.9e-20 103.6 54 90.7
Lsat_1_v5_gn_5_21720 Lactuca sativa HOM05D001674 ORTHO05D008374 1.9e-20 103.6 53 90.6
Eucgr.B00565 Eucalyptus grandis HOM05D001674 ORTHO05D008374 2.4e-20 103.2 112 54.5
Sed0002195 Sechium edule HOM05D001674 ORTHO05D008374 2.4e-20 103.2 263 36.1
C03p03890 Brassica napus HOM05D001674 ORTHO05D008374 3.2e-20 102.8 54 90.7
BolC3t12927H Brassica oleracea HOM05D001674 ORTHO05D008374 3.2e-20 102.8 54 90.7
Lj1g0003467 Lotus japonicus HOM05D001674 ORTHO05D008374 3.2e-20 102.8 245 35.9
Aa31LG3G18650 Aethionema arabicum HOM05D001674 ORTHO05D008374 4.2e-20 102.4 54 87.0
A03p03470 Brassica napus HOM05D001674 ORTHO05D008374 4.2e-20 102.4 54 88.9
BraA03t09697Z Brassica rapa HOM05D001674 ORTHO05D008374 4.2e-20 102.4 54 88.9
Thhalv10012481m.g Eutrema salsugineum HOM05D001674 ORTHO05D008374 4.2e-20 102.4 54 90.7
SGA_v2.0_scaffold65G22108 Striga asiatica HOM05D001674 ORTHO05D008374 5.4e-20 102.1 267 33.0
Os07g0598300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008374 7.1e-20 101.7 54 83.3
Sc12g0006560 Simmondsia chinensis HOM05D001674 ORTHO05D008374 7.1e-20 101.7 54 90.7
Zm00001eb326710 Zea mays HOM05D001674 ORTHO05D008374 7.1e-20 101.7 55 85.5
Gohir.A03G068966 Gossypium hirsutum HOM05D001674 ORTHO05D008374 9.3e-20 101.3 54 88.9
Sp6g35120 Schrenkiella parvula HOM05D001674 ORTHO05D008374 9.3e-20 101.3 54 88.9
AL6G18150 Arabidopsis lyrata HOM05D001674 ORTHO05D008374 1.2e-19 100.9 54 88.9
CARHR205370 Cardamine hirsuta HOM05D001674 ORTHO05D008374 1.2e-19 100.9 54 88.9
Psat5g198440 Pisum sativum HOM05D001674 ORTHO05D008374 1.2e-19 100.9 265 32.5
Hund09848 Selenicereus undatus HOM05D001674 ORTHO05D008374 1.2e-19 100.9 268 32.8
Thecc.03G096600 Theobroma cacao HOM05D001674 ORTHO05D008374 1.6e-19 100.5 54 88.9
TPR.G12256 Trifolium pratense HOM05D001674 ORTHO05D008374 1.6e-19 100.5 249 34.1
Gohir.D03G095500 Gossypium hirsutum HOM05D001674 ORTHO05D008374 2.1e-19 100.1 54 87.0
Gorai.003G100200 Gossypium raimondii HOM05D001674 ORTHO05D008374 2.1e-19 100.1 54 87.0
AT5G07810 Arabidopsis thaliana HOM05D001674 ORTHO05D008374 2.7e-19 99.8 54 87.0
CANSAT80G0757 Cannabis sativa HOM05D001674 ORTHO05D008374 2.7e-19 99.8 267 33.7
Carub.0006s0673 Capsella rubella HOM05D001674 ORTHO05D008374 4.6e-19 99.0 54 87.0
Ah.11g048050 Amaranthus hybridus HOM05D001674 ORTHO05D008374 7.8e-19 98.2 53 88.7
AUR62008488 Chenopodium quinoa HOM05D001674 ORTHO05D008374 7.8e-19 98.2 54 87.0
Cpa.g.sc2632.1 Carica papaya HOM05D001674 ORTHO05D008374 1.0e-18 97.8 269 32.0
Peaxi162Scf00201g00024 Petunia axillaris HOM05D001674 ORTHO05D008374 1.3e-18 97.4 53 86.8
SHI26981 Sapria himalayana HOM05D001674 ORTHO05D008374 1.3e-18 97.4 276 33.3
EL10Ac5g11090 Beta vulgaris HOM05D001674 ORTHO05D008374 1.7e-18 97.1 53 86.8
AUR62021607 Chenopodium quinoa HOM05D001674 ORTHO05D008374 1.7e-18 97.1 84 60.7
Phvul.009G190731 Phaseolus vulgaris HOM05D001674 ORTHO05D008374 2.3e-18 96.7 54 85.2
Ca_13630_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008374 3.0e-18 96.3 54 85.2
Glyma.06G199800 Glycine max HOM05D001674 ORTHO05D008374 3.9e-18 95.9 54 83.3
VMungo1309G2923 Vigna mungo HOM05D001674 ORTHO05D008374 5.1e-18 95.5 54 83.3
CAN.G479.34 Capsicum annuum HOM05D001674 ORTHO05D008374 1.1e-17 94.4 267 32.2
Sopen03g034520 Solanum pennellii HOM05D001674 ORTHO05D008374 1.1e-17 94.4 272 32.4
Nitab4.5_0002881g0060 Nicotiana tabacum HOM05D001674 ORTHO05D008374 1.5e-17 94.0 267 31.8
AagrBONN_evm.TU.Sc2ySwM_117.3709 Anthoceros agrestis HOM05D001674 ORTHO05D008374 3.6e-16 89.4 54 74.1
SMO358G0589 Selaginella moellendorffii HOM05D001674 ORTHO05D008374 3.6e-16 89.4 54 77.8
Pp3c1_13300 Physcomitrium patens HOM05D001674 ORTHO05D008374 2.4e-15 86.7 54 70.4
Pp3c1_13308 Physcomitrium patens HOM05D001674 ORTHO05D008374 2.4e-15 86.7 54 70.4
Nitab4.5_0004511g0090 Nicotiana tabacum HOM05D001674 ORTHO05D008374 3.4e-14 82.8 72 61.1
MCO15G340 Micromonas commoda HOM05D001674 ORTHO05D008374 2.9e-13 79.7 77 46.8
PRCOL_00003770 Prasinoderma coloniale HOM05D001674 ORTHO05D008374 4.9e-13 79.0 54 68.5
CiPaw.11G049400 Carya illinoinensis HOM05D001674 ORTHO05D008374 1.6e-11 73.9 40 90.0
CSS0045245 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D008374 2.1e-11 73.6 86 58.1
CBR_g29672 Chara braunii HOM05D001674 ORTHO05D005257 2.7e-11 73.2 52 67.3
MELO3C017204.2 Cucumis melo HOM05D001674 ORTHO05D008374 2.3e-10 70.1 214 32.2
Mapoly0113s0030 Marchantia polymorpha HOM05D000104 ORTHO05D005257 6.7e-10 68.6 66 50.0
AUR62023654 Chenopodium quinoa HOM05D001674 ORTHO05D005257 1.1e-09 67.8 52 63.5
AUR62002539 Chenopodium quinoa HOM05D001674 ORTHO05D005257 1.5e-09 67.4 52 63.5
PSO170G0915 Papaver somniferum HOM05D001674 ORTHO05D005257 1.5e-09 67.4 53 58.5
Peaxi162Scf00323g00935 Petunia axillaris HOM05D001674 ORTHO05D005257 1.5e-09 67.4 54 55.6
MSTRG.22009 Avicennia marina HOM05D001674 ORTHO05D005257 1.9e-09 67.0 54 55.6
Gohir.A06G112800 Gossypium hirsutum HOM05D001674 ORTHO05D005257 1.9e-09 67.0 54 55.6
Phvul.003G123100 Phaseolus vulgaris HOM05D001674 ORTHO05D005257 1.9e-09 67.0 54 53.7
DCAR_026929 Daucus carota HOM05D001674 ORTHO05D005257 2.5e-09 66.6 72 45.8
Gohir.D06G117500 Gossypium hirsutum HOM05D001674 ORTHO05D005257 2.5e-09 66.6 54 55.6
Gorai.010G135100 Gossypium raimondii HOM05D001674 ORTHO05D005257 2.5e-09 66.6 54 55.6
Lj4g0019577 Lotus japonicus HOM05D001674 ORTHO05D005257 2.5e-09 66.6 54 53.7
Lalb_Chr13g0299021 Lupinus albus HOM05D001674 ORTHO05D005257 2.5e-09 66.6 54 53.7
Zm00001eb328680 Zea mays HOM05D001674 ORTHO05D005257 2.5e-09 66.6 53 58.5
Ciclev10004488m.g Citrus clementina HOM05D001674 ORTHO05D005257 3.3e-09 66.2 54 53.7
Pp3c16_16990 Physcomitrium patens HOM05D001674 ORTHO05D005257 3.3e-09 66.2 54 55.6
Sed0007966 Sechium edule HOM05D001674 ORTHO05D005257 3.3e-09 66.2 54 53.7
SEGI_26199 Sequoiadendron giganteum HOM05D001674 ORTHO05D005257 3.3e-09 66.2 49 65.3
Thecc.05G189900 Theobroma cacao HOM05D001674 ORTHO05D005257 3.3e-09 66.2 54 55.6
Cre05.g236950 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D005257 4.3e-09 65.9 53 49.1
Glyma.13G118200 Glycine max HOM05D001674 ORTHO05D005257 4.3e-09 65.9 54 53.7
Manes.03G212800 Manihot esculenta HOM05D001674 ORTHO05D005257 4.3e-09 65.9 54 53.7
Nitab4.5_0000978g0050 Nicotiana tabacum HOM05D001674 ORTHO05D005257 4.3e-09 65.9 54 53.7
Solyc12g098860.2 Solanum lycopersicum HOM05D001674 ORTHO05D005257 4.3e-09 65.9 54 53.7
Sopen12g033610 Solanum pennellii HOM05D001674 ORTHO05D005257 4.3e-09 65.9 54 53.7
SGA_v2.0_scaffold322G48597 Striga asiatica HOM05D001674 ORTHO05D005257 4.3e-09 65.9 72 48.6
VMungo1215G3338 Vigna mungo HOM05D001674 ORTHO05D005257 4.3e-09 65.9 49 59.2
CAN.G484.96 Capsicum annuum HOM05D001674 ORTHO05D005257 5.6e-09 65.5 54 53.7
ClCG05G006880 Citrullus lanatus HOM05D001674 ORTHO05D005257 5.6e-09 65.5 54 53.7
MD16G1134000 Malus domestica HOM05D001674 ORTHO05D005257 5.6e-09 65.5 54 53.7
PSO445G0012 Papaver somniferum HOM05D001674 ORTHO05D005257 5.6e-09 65.5 53 56.6
Potri.010G003300 Populus trichocarpa HOM05D001674 ORTHO05D005257 5.6e-09 65.5 54 53.7
CANSAT78G0587 Cannabis sativa HOM05D001674 ORTHO05D005257 7.4e-09 65.1 54 53.7
Glyma.17G041700 Glycine max HOM05D001674 ORTHO05D005257 7.4e-09 65.1 54 53.7
HanXRQChr05g0148951 Helianthus annuus HOM05D001674 ORTHO05D005257 7.4e-09 65.1 54 55.6
MCO12G185 Micromonas commoda HOM05D000104 ORTHO05D005257 7.4e-09 65.1 54 53.7
TWI77G0300 Tripterygium wilfordii HOM05D001674 ORTHO05D005257 7.4e-09 65.1 85 38.8
CsaV3_3G015550 Cucumis sativus L. HOM05D001674 ORTHO05D005257 9.6e-09 64.7 54 53.7
ECA246G1105 Erigeron canadensis HOM05D001674 ORTHO05D005257 9.6e-09 64.7 54 55.6
Lsat_1_v5_gn_6_118341 Lactuca sativa HOM05D001674 ORTHO05D005257 9.6e-09 64.7 54 55.6
Prupe.1G103200 Prunus persica HOM05D001674 ORTHO05D005257 9.6e-09 64.7 54 53.7
CiPaw.01G127900 Carya illinoinensis HOM05D001674 ORTHO05D005257 1.3e-08 64.3 54 51.9
Duzib235G1161 Durio zibethinus HOM05D001674 ORTHO05D005257 1.3e-08 64.3 54 51.9
Nitab4.5_0012375g0010 Nicotiana tabacum HOM05D001674 ORTHO05D005257 1.3e-08 64.3 49 59.2
Os07g0636200 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D005257 1.3e-08 64.3 53 56.6
QL06p014511 Quercus lobata HOM05D001674 ORTHO05D005257 1.3e-08 64.3 54 51.9
Aqoxy2G02487 Aquilegia oxysepala HOM05D001674 ORTHO05D005257 1.6e-08 63.9 54 55.6
Cc03_g00030 Coffea canephora HOM05D001674 ORTHO05D005257 1.6e-08 63.9 53 54.7
COL.COLO4_36610 Corchorus olitorius HOM05D001674 ORTHO05D005257 1.6e-08 63.9 49 59.2
Eucgr.H04132 Eucalyptus grandis HOM05D001674 ORTHO05D005257 1.6e-08 63.9 72 47.2
FvH4_4g21690 Fragaria vesca HOM05D001674 ORTHO05D005257 1.6e-08 63.9 54 51.9
MD13G1138200 Malus domestica HOM05D000021 ORTHO05D005257 1.6e-08 63.9 54 53.7
Sc25g0001840 Simmondsia chinensis HOM05D001674 ORTHO05D005257 1.6e-08 63.9 54 53.7
HPP92_013437 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.6e-08 63.9 86 48.8
AT1G48310 Arabidopsis thaliana HOM05D001674 ORTHO05D005257 2.1e-08 63.5 49 57.1
BcaB02g11412 Brassica carinata HOM05D001674 ORTHO05D005257 2.1e-08 63.5 49 57.1
BcaC05g27587 Brassica carinata HOM05D001674 ORTHO05D005257 2.1e-08 63.5 49 57.1
A05p21130 Brassica napus HOM05D001674 ORTHO05D005257 2.1e-08 63.5 49 57.1
C05p35670 Brassica napus HOM05D001674 ORTHO05D005257 2.1e-08 63.5 49 57.1
Migut.N03098 Erythranthe guttata HOM05D001674 ORTHO05D005257 2.1e-08 63.5 54 51.9
Lj3C842G5 Lonicera japonica HOM05D001674 ORTHO05D005257 2.1e-08 63.5 54 53.7
RcHm_v2.0_Chr4g0427901 Rosa chinensis HOM05D001674 ORTHO05D005257 2.1e-08 63.5 54 51.9
TAR371G0283 Trochodendron aralioides HOM05D000234 ORTHO05D000335 2.1e-08 63.5 43 65.1
EL10Ac3g06234 Beta vulgaris HOM05D001674 ORTHO05D005257 2.8e-08 63.2 49 59.2
Carub.0001s3744 Capsella rubella HOM05D001674 ORTHO05D005257 2.8e-08 63.2 49 57.1
Dinv24721 Davidia involucrata HOM05D001674 ORTHO05D005257 2.8e-08 63.2 54 53.7
Thhalv10011287m.g Eutrema salsugineum HOM05D001674 ORTHO05D005257 2.8e-08 63.2 49 57.1
Medtr4g124090 Medicago truncatula HOM05D001674 ORTHO05D005257 2.8e-08 63.2 54 50.0
Sp1g35260 Schrenkiella parvula HOM05D001674 ORTHO05D005257 2.8e-08 63.2 49 57.1
GSVIVG01017700001 Vitis vinifera HOM05D001674 ORTHO05D005257 2.8e-08 63.2 54 53.7
Actinidia18515 Actinidia chinensis HOM05D001674 ORTHO05D005257 3.7e-08 62.8 54 53.7
CSS0042912 Camellia sinensis var. sinensis HOM05D001674 ORTHO05D005257 4.8e-08 62.4 49 59.2
SMO364G0824 Selaginella moellendorffii HOM05D001674 ORTHO05D005257 4.8e-08 62.4 53 54.7
PGR004G0096 Punica granatum HOM05D001674 ORTHO05D005257 6.2e-08 62.0 54 55.6
THA.LOC104802617 Tarenaya hassleriana HOM05D001674 ORTHO05D005257 8.1e-08 61.6 54 53.7
Ca_21367_v3 Cicer arietinum L. HOM05D001674 ORTHO05D005257 1.1e-07 61.2 54 50.0
Psat0s1206g0200 Pisum sativum HOM05D001674 ORTHO05D005257 1.1e-07 61.2 54 51.9
SalBow6G2708 Salvia bowleyana HOM05D001674 ORTHO05D005257 1.1e-07 61.2 54 50.0
TPR.G12547 Trifolium pratense HOM05D001674 ORTHO05D005257 1.1e-07 61.2 54 50.0
ATR0796G053 Amborella trichopoda HOM05D001674 ORTHO05D005257 1.4e-07 60.8 49 57.1
TAR362G1045 Trochodendron aralioides HOM05D001674 ORTHO05D005257 3.1e-07 59.7 67 46.3
unitig_8.g3632 Utricularia gibba HOM05D001674 ORTHO05D005257 1.2e-06 57.8 58 50.0
HPP92_020541 Vanilla planifolia HOM05D001674 ORTHO05D005257 1.5e-06 57.4 55 52.7
Cre03.g199350 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005257 2.6e-06 56.6 56 55.4
Actinidia09242 Actinidia chinensis HOM05D001674 ORTHO05D008374 5.8e-06 55.5 80 46.2
PRCOL_00002706 Prasinoderma coloniale HOM05D000104 ORTHO05D005257 7.6e-06 55.1 48 52.1
Solyc03g115530.4 Solanum lycopersicum HOM05D001674 ORTHO05D008374 9.9e-06 54.7 85 50.6


User provided reference genes

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