Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 2.4e-259 898.3 445 100.0
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 3.7e-175 618.6 455 70.8
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.0e-173 612.8 442 70.1
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 4.7e-170 601.7 449 68.2
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 3.1e-166 589.0 426 68.1
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 4.1e-166 588.6 425 66.8
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 4.1e-166 588.6 445 68.5
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.0e-165 586.3 427 68.9
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 7.7e-165 584.3 428 67.1
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 3.8e-164 582.0 459 64.9
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.5e-163 579.3 445 65.8
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 3.2e-163 578.9 444 64.4
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 5.5e-163 578.2 448 65.2
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.6e-162 576.6 448 65.0
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 2.1e-162 576.2 411 69.6
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.7e-162 575.9 459 64.3
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 6.1e-162 574.7 452 64.4
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 6.8e-161 571.2 430 68.1
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.2e-160 570.5 444 67.1
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 2.0e-160 569.7 399 70.9
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 3.4e-160 568.9 442 65.6
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.7e-159 565.5 430 64.9
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 8.3e-159 564.3 452 63.5
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 5.4e-158 561.6 410 67.8
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.2e-157 560.5 458 63.5
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.2e-157 560.5 452 63.5
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 3.5e-157 558.9 445 64.5
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.3e-156 557.0 447 64.9
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.9e-156 555.8 450 62.4
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 3.8e-156 555.4 446 64.8
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.0e-156 555.1 455 62.9
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.0e-156 555.1 455 62.9
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 8.6e-156 554.3 414 69.1
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 1.9e-155 553.1 428 65.7
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.5e-155 552.7 407 67.3
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.5e-155 552.7 448 62.5
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 1.6e-154 550.1 436 63.1
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 3.6e-154 548.9 448 62.1
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 1.4e-153 547.0 440 63.0
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.0e-153 545.8 429 64.1
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 4.0e-153 545.4 420 64.3
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 5.2e-153 545.0 435 64.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.2e-153 545.0 417 66.4
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 8.9e-153 544.3 446 62.6
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 8.9e-153 544.3 446 62.6
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.2e-152 543.9 416 64.7
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 5.7e-152 541.6 434 63.8
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.7e-151 540.0 435 61.8
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 6.3e-151 538.1 457 60.6
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 8.3e-151 537.7 452 60.4
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.4e-150 536.2 445 62.9
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 3.1e-150 535.8 416 65.1
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 3.1e-150 535.8 441 61.2
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.6e-149 533.5 443 61.4
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 5.9e-149 531.6 532 55.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.7e-148 530.0 444 61.0
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 3.9e-148 528.9 427 61.8
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.5e-147 526.9 417 63.8
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 4.3e-147 525.4 383 67.4
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 5.6e-147 525.0 461 61.6
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 9.5e-147 524.2 410 63.9
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 6.1e-146 521.5 396 66.4
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.0e-145 520.8 441 61.5
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 4.0e-145 518.8 428 62.6
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.9e-142 510.0 440 60.5
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 5.4e-142 508.4 419 63.2
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.6e-141 505.4 406 64.3
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 3.9e-140 502.3 428 61.0
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 5.0e-140 501.9 427 60.0
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.1e-139 500.7 442 58.8
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 1.5e-139 500.4 429 58.5
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 1.9e-139 500.0 436 61.0
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 3.3e-139 499.2 439 57.9
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.3e-139 499.2 442 58.6
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.3e-139 499.2 442 58.1
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 5.6e-139 498.4 442 57.7
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 1.2e-138 497.3 405 61.2
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 4.7e-138 495.4 429 58.0
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 6.2e-138 495.0 428 58.6
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 8.0e-138 494.6 441 57.8
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 3.1e-137 492.7 428 58.4
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 6.8e-137 491.5 356 67.1
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.2e-136 490.7 411 60.1
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.5e-136 490.3 428 58.2
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 3.4e-136 489.2 417 59.7
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 5.8e-136 488.4 374 65.8
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 7.0e-134 481.5 426 58.2
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 2.3e-132 476.5 437 56.3
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.1e-131 474.2 365 66.8
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.5e-131 473.8 460 55.9
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 2.8e-130 469.5 451 57.4
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 5.2e-129 465.3 443 55.1
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 5.8e-128 461.8 412 55.6
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 4.6e-125 452.2 407 59.5
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.7e-124 450.3 419 59.4
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.4e-118 430.6 399 57.6
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.7e-116 423.7 320 66.6
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.3e-116 423.3 317 67.8
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 9.6e-115 417.9 505 47.7
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 2.1e-114 416.8 424 53.1
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.0e-108 397.9 494 47.2
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 5.1e-108 395.6 445 51.0
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 4.2e-102 375.9 310 61.6
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 8.1e-98 361.7 538 41.1
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 5.7e-83 312.4 234 65.4
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 2.2e-82 310.5 296 55.7
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 9.0e-81 305.1 271 58.7
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 3.4e-72 276.6 407 41.8
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 4.7e-69 266.2 479 36.7
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.1e-65 255.0 188 66.5
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 5.3e-57 226.1 287 42.2
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-53 214.9 126 82.5
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.2e-53 214.9 126 82.5
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 9.1e-41 172.2 296 36.8
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 6.6e-39 166.0 127 63.0
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.5e-38 164.9 128 62.5
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.8e-36 157.9 112 70.5
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 9.2e-33 145.6 190 45.3
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.2e-27 128.6 128 56.2
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 7.5e-27 125.9 116 53.4
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-22 111.3 68 72.1
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 9.8e-19 99.0 119 47.9
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-10 70.5 140 33.6
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 3.9e-07 60.5 208 26.0
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.9e-07 60.5 262 24.4
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 6.6e-07 59.7 188 27.1
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 8.6e-07 59.3 285 24.9
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-06 58.9 193 28.0
Os12g0211301 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.1e-06 58.9 64 46.9
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 2.5e-06 57.8 191 28.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 3.3e-06 57.4 154 29.2
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 3.3e-06 57.4 193 27.5
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.3e-06 57.4 154 29.2
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 3.3e-06 57.4 154 29.2
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.3e-06 57.4 193 27.5
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 3.3e-06 57.4 206 25.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 4.3e-06 57.0 191 27.7
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 5.6e-06 56.6 154 28.6
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 5.6e-06 56.6 154 29.2
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.3e-06 56.2 154 27.3
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.6e-06 55.8 234 23.9
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.6e-06 55.8 272 25.4
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 9.6e-06 55.8 152 29.6
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 9.6e-06 55.8 211 25.6


User provided reference genes

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