Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.1e-198 694.9 342 100.0
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 4.8e-175 617.8 322 92.9
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 5.9e-173 610.9 322 91.0
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 5.9e-173 610.9 322 91.0
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 5.9e-173 610.9 322 91.0
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.0e-172 610.1 322 91.0
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.0e-172 610.1 322 91.0
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.2e-172 609.0 322 91.6
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.2e-171 604.7 322 89.8
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.5e-171 604.4 322 89.8
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 4.7e-170 601.3 322 89.1
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 4.7e-170 601.3 322 89.4
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 4.0e-169 598.2 322 89.4
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.4e-166 589.7 322 87.9
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 4.1e-166 588.2 322 88.5
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.6e-165 586.3 322 88.2
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.3e-164 583.2 322 86.0
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.6e-162 576.2 322 85.7
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 4.7e-162 574.7 322 86.6
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 4.7e-162 574.7 322 86.6
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 3.9e-156 555.1 356 75.8
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.5e-155 552.4 322 84.5
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 4.9e-151 538.1 322 78.3
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 9.2e-150 533.9 322 77.6
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.7e-149 532.3 322 77.0
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 4.6e-149 531.6 322 78.0
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.7e-148 529.6 322 77.6
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.5e-147 526.6 322 77.0
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.5e-147 525.8 322 76.4
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 3.3e-147 525.4 322 76.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 4.3e-147 525.0 323 76.5
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 4.3e-147 525.0 322 76.7
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 4.3e-147 525.0 322 77.6
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 4.3e-147 525.0 323 75.5
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 4.3e-147 525.0 322 76.1
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 9.5e-147 523.9 322 76.1
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 1.6e-146 523.1 322 76.4
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.6e-146 523.1 322 76.4
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.6e-146 523.1 322 77.0
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 3.6e-146 521.9 322 75.8
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 4.7e-146 521.5 322 75.8
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 6.2e-146 521.2 323 75.2
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.1e-145 520.4 322 76.4
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.1e-145 520.4 322 76.7
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 1.1e-145 520.4 323 75.9
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 3.1e-145 518.8 322 76.4
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.1e-145 518.8 322 74.8
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.0e-145 518.5 322 74.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 8.9e-145 517.3 322 75.5
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.9e-145 517.3 337 73.0
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 2.6e-144 515.8 322 75.2
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 2.6e-144 515.8 322 75.2
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 5.8e-144 514.6 322 74.5
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 9.9e-144 513.8 322 72.7
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.4e-143 511.1 337 73.0
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.1e-142 510.4 322 73.0
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.4e-142 509.2 322 73.0
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 4.1e-142 508.4 323 74.6
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 4.1e-142 508.4 322 73.6
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 9.2e-142 507.3 322 73.6
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 1.2e-141 506.9 322 74.2
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.6e-141 506.5 322 74.5
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.7e-141 505.8 323 74.6
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 2.7e-141 505.8 323 74.3
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 2.7e-141 505.8 322 75.2
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 7.8e-141 504.2 322 73.3
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 7.8e-141 504.2 322 73.3
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.0e-140 503.8 322 72.7
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 1.3e-140 503.4 322 72.4
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.3e-140 503.4 322 74.8
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.7e-140 503.1 322 72.4
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 5.1e-140 501.5 322 73.6
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.1e-139 500.4 322 73.3
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.9e-139 499.6 322 74.5
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 2.5e-139 499.2 322 73.9
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 5.6e-139 498.0 322 72.4
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.3e-139 497.7 323 74.0
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 7.3e-139 497.7 323 74.3
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.1e-138 496.1 322 78.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 3.6e-138 495.4 322 70.8
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 6.2e-138 494.6 322 71.4
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.4e-137 493.4 322 72.4
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 4.0e-137 491.9 374 65.0
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.2e-137 491.5 322 73.6
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.5e-136 490.0 322 69.6
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.4e-136 488.8 315 74.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 3.4e-136 488.8 322 71.4
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 4.4e-136 488.4 322 71.1
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 4.1e-134 481.9 323 70.9
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 4.1e-134 481.9 322 69.9
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 5.4e-134 481.5 300 75.3
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.5e-133 478.8 354 66.1
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 6.0e-133 478.0 323 70.6
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 7.8e-133 477.6 382 62.0
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 6.6e-132 474.6 322 69.3
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.2e-130 470.3 322 70.2
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 6.2e-130 468.0 337 67.4
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 8.4e-127 457.6 322 68.0
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 8.4e-127 457.6 334 66.5
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.4e-126 456.8 348 64.9
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 3.2e-126 455.7 302 72.5
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 5.4e-126 454.9 322 67.7
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.5e-123 446.8 368 61.1
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.9e-123 446.4 322 67.1
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.6e-122 442.2 328 64.0
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 8.1e-122 441.0 346 65.3
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.8e-121 439.9 289 72.0
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.7e-119 433.3 322 65.5
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 3.5e-117 425.6 338 62.1
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 1.6e-114 416.8 322 63.4
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.0e-112 409.8 322 63.4
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.0e-112 409.8 335 62.4
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 9.3e-110 401.0 287 67.9
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.9e-109 397.9 496 46.4
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.8e-108 396.7 312 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.3e-103 380.6 327 54.4
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 6.5e-103 378.3 327 54.1
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.4e-103 377.9 388 53.9
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.7e-101 372.9 226 74.8
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 4.3e-99 365.5 322 52.5
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.7e-98 362.5 261 67.0
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.1e-97 360.9 323 55.4
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.9e-94 350.1 342 48.8
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.4e-92 344.0 334 59.0
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 8.5e-87 324.7 172 89.0
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 9.1e-81 304.7 329 46.2
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.3e-79 300.8 206 69.9
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-79 300.1 327 47.1
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.5e-79 298.1 327 46.8
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 2.7e-77 293.1 208 68.8
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.8e-76 288.1 243 58.0
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 9.4e-70 268.1 185 67.0
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.3e-68 263.5 194 68.6
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.3e-68 263.5 194 68.6
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 5.2e-68 262.3 166 73.5
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.8e-68 261.5 227 56.8
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.1e-65 253.1 327 42.2
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-64 250.8 226 54.9
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-64 250.8 226 54.9
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-64 250.8 226 54.9
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 9.5e-46 188.3 134 65.7
Lj2A1035T52 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-33 148.3 91 75.8
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.7e-32 143.7 97 70.1
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 2.8e-21 107.1 87 51.7
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.7e-21 106.3 49 100.0
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 4.0e-20 103.2 54 87.0
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 7.1e-17 92.4 61 65.6
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 1.9e-14 84.3 55 63.6
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.9e-10 70.5 45 64.4
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 6.0e-08 62.8 37 75.7
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 5.1e-07 59.7 40 67.5


User provided reference genes

Program Settings