Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 2217.6 1185 100.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 2217.6 1185 100.0
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 2099.3 1186 94.4
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 2041.5 1185 91.8
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 2008.4 1185 91.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 2002.6 1186 90.2
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1976.1 1185 89.6
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1962.2 1170 90.3
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1961.4 1184 89.4
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1956.0 1191 89.1
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1954.5 1191 88.8
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1953.7 1197 88.6
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1951.4 1187 89.0
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1863.6 1187 85.3
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1780.4 1193 80.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1585.1 1178 72.2
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1197 72.3
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1576.2 1203 72.2
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1569.3 1197 71.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1553.1 1197 71.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1551.6 1199 70.6
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1545.4 1196 70.7
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1544.6 1172 71.6
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1544.3 1199 70.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1544.3 1209 71.6
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1542.7 1263 68.2
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1541.6 1197 71.0
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1540.0 1204 71.3
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1540.0 1195 70.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1539.2 1200 70.1
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1539.2 1197 70.3
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1535.4 1253 69.0
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1199 70.0
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1529.2 1198 70.1
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1529.2 1197 69.8
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1528.5 1199 69.6
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1524.2 1200 70.0
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1206 71.1
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1197 69.9
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1523.5 1193 70.1
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1523.1 1202 70.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1522.3 1198 69.6
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1520.0 1158 70.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1516.9 1189 69.0
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1516.5 1201 69.4
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1516.5 1196 69.3
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1513.4 1200 68.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1511.1 1208 68.6
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1509.2 1207 69.8
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1504.6 1176 70.3
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1504.2 1197 68.4
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1504.2 1203 68.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1500.3 1194 68.7
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1499.2 1203 69.2
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1499.2 1175 70.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1497.6 1209 68.5
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1497.3 1200 68.8
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1493.0 1219 67.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1492.2 1214 68.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1491.1 1193 68.6
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1489.9 1198 68.9
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1489.6 1204 69.3
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1209 67.7
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1486.1 1213 67.8
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1484.9 1198 68.5
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1482.6 1190 68.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1192 68.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1218 68.2
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1478.0 1186 68.3
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1476.8 1199 67.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1199 67.8
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1472.2 1202 68.0
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1468.0 1228 66.9
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1464.5 1181 67.5
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1464.1 1174 69.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1463.7 1188 68.0
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1457.2 1115 71.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1453.7 1164 67.8
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1452.6 1187 67.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1452.2 1140 70.0
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1450.3 1183 68.0
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1427.2 1180 67.5
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1423.7 1194 67.3
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1421.4 1287 63.0
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1420.6 1171 67.7
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1417.5 1218 65.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1416.4 1170 65.9
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1415.2 1229 65.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1401.3 1194 65.4
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1398.6 1394 58.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1393.6 1068 70.3
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1365.1 1201 65.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1364.4 1174 65.2
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1352.8 1180 63.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1327.4 1185 62.3
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1326.2 879 77.5
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1320.4 1173 64.6
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1301.2 1205 60.8
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1297.7 793 88.0
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1287.3 1209 60.4
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1265.0 1190 60.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1249.6 930 71.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1229.5 872 73.7
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1227.6 1233 58.3
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1128.2 790 75.1
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1107.0 1250 51.8
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1100.5 847 70.0
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 2.3e-301 1039.3 760 73.3
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.5e-271 940.3 897 61.2
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 3.3e-255 885.9 665 69.9
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 6.9e-253 878.2 970 54.7
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-250 869.0 793 62.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.5e-242 842.0 923 56.9
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.0e-191 674.1 615 60.8
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.3e-179 634.0 545 62.8
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.8e-169 600.5 962 39.2
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 8.1e-169 599.0 830 49.5
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 7.3e-154 549.3 402 68.4
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.2e-143 515.4 325 82.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 4.9e-142 510.0 377 71.9
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 5.1e-139 500.0 752 46.4
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 7.2e-125 453.0 441 60.1
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 4.8e-121 440.3 1161 32.4
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 8.8e-115 419.5 300 70.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.0e-107 396.0 237 80.2
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.7e-102 378.6 311 65.9
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.1e-100 371.7 374 60.2
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-88 332.8 391 57.0
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 9.1e-88 329.7 1271 25.8
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.0e-83 314.7 221 74.2
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.5e-82 312.4 221 73.8
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 8.3e-81 306.6 212 69.8
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 9.2e-80 303.1 206 70.4
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 9.2e-80 303.1 206 70.4
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 4.5e-79 300.8 174 82.2
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 7.5e-74 283.5 324 54.0
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 6.4e-73 280.4 224 65.6
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 5.4e-72 277.3 385 49.6
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 9.5e-69 266.5 347 48.4
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 3.0e-62 245.0 359 48.2
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.7e-60 237.7 329 50.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.2e-52 210.7 136 77.9
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.1e-51 209.9 131 79.4
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.6e-50 205.3 161 66.5
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-49 203.0 205 64.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 8.4e-49 200.3 317 45.7
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-48 198.7 154 66.9
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 8.4e-41 173.7 113 72.6
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 2.5e-37 162.2 233 48.1
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.4e-35 155.6 77 98.7
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.9e-33 148.7 94 74.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 4.6e-31 141.4 83 79.5
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-30 139.8 193 50.3
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.5e-29 136.3 104 74.0
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 5.6e-29 134.4 87 79.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.1e-28 132.5 137 53.3
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.1e-27 128.6 123 60.2
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 9.0e-27 127.1 116 69.0
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.0e-22 113.6 112 60.7
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 3.3e-21 108.6 218 40.8
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 4.3e-21 108.2 65 80.0
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.6e-20 106.3 55 89.1
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.6e-20 106.3 57 89.5
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 3.7e-20 105.1 57 91.2
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 6.2e-20 104.4 57 89.5
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-19 103.6 73 69.9
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.4e-19 103.2 59 91.5
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 7.6e-18 97.4 69 71.0
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.3e-17 96.7 95 61.1
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.5e-16 92.4 80 55.0
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-16 90.9 77 58.4
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 2.8e-12 79.0 124 41.1
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 3.7e-12 78.6 146 44.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 6.3e-12 77.8 70 62.9
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 3.2e-08 65.5 47 61.7
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 7.9e-07 60.8 50 64.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.0e-06 58.9 68 45.6
BcaC02g12045 Brassica carinata HOM05D048261 ORTHO05D039052 8.7e-06 57.4 49 69.4


User provided reference genes

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