Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 1.6e-115 419.5 210 100.0
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 6.2e-64 248.1 287 54.7
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 2.0e-62 243.0 289 53.6
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 7.6e-62 241.1 289 51.9
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.7e-61 240.0 288 53.1
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 6.4e-61 238.0 284 53.2
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 4.2e-60 235.3 289 51.9
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 1.2e-59 233.8 286 52.4
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 6.0e-59 231.5 286 52.1
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 6.0e-59 231.5 286 52.1
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 1.7e-58 229.9 288 51.7
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 6.6e-58 228.0 291 49.8
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.5e-54 216.9 254 52.0
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 4.4e-54 215.3 289 48.4
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 5.8e-54 214.9 288 49.7
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 5.8e-54 214.9 288 49.7
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 3.8e-53 212.2 289 47.4
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 8.4e-53 211.1 289 47.4
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.4e-52 210.3 266 50.0
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 1.9e-52 209.9 255 52.5
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.9e-52 209.9 288 46.5
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.9e-52 209.9 254 50.4
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.4e-52 209.5 266 51.1
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.4e-52 209.5 266 51.1
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 3.2e-52 209.1 292 49.0
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 3.2e-52 209.1 285 48.4
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 4.2e-52 208.8 254 50.8
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-51 207.2 266 49.6
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 2.1e-51 206.5 266 48.9
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 2.1e-51 206.5 266 48.9
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 7.8e-51 204.5 255 49.8
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 7.8e-51 204.5 255 49.0
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 1.0e-50 204.1 255 49.0
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.7e-50 203.4 256 49.2
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 1.7e-50 203.4 267 49.8
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 2.3e-50 203.0 255 48.6
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 3.0e-50 202.6 267 48.7
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 3.0e-50 202.6 289 45.7
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 3.9e-50 202.2 263 47.5
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 5.1e-50 201.8 255 49.8
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 5.1e-50 201.8 254 49.2
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 8.7e-50 201.1 256 49.2
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 8.7e-50 201.1 256 47.7
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 8.7e-50 201.1 267 49.4
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.5e-49 200.3 273 47.3
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 1.5e-49 200.3 265 47.9
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 2.5e-49 199.5 254 49.2
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 2.5e-49 199.5 289 44.6
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 2.5e-49 199.5 256 50.4
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 3.3e-49 199.1 255 47.8
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 4.3e-49 198.7 255 47.8
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 5.6e-49 198.4 255 46.3
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 7.3e-49 198.0 255 47.5
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 9.6e-49 197.6 267 47.2
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 9.6e-49 197.6 256 46.9
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 9.6e-49 197.6 256 46.9
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.6e-48 196.8 289 44.6
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 2.1e-48 196.4 268 47.0
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 2.1e-48 196.4 228 50.0
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 4.8e-48 195.3 254 48.0
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 4.8e-48 195.3 255 46.7
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 6.2e-48 194.9 265 47.9
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.2e-48 194.9 255 46.7
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.2e-48 194.9 255 46.7
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.2e-48 194.9 255 46.7
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 8.1e-48 194.5 289 44.3
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 2.4e-47 193.0 253 49.0
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 3.1e-47 192.6 228 50.4
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.0e-47 192.2 265 46.0
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 5.3e-47 191.8 287 45.6
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 3.4e-46 189.1 256 46.9
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 3.4e-46 189.1 286 44.1
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 4.5e-46 188.7 296 43.6
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 5.8e-46 188.3 289 44.6
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 5.8e-46 188.3 289 44.3
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 5.8e-46 188.3 286 43.7
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 7.6e-46 188.0 255 47.8
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.3e-45 187.2 228 48.7
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 1.7e-45 186.8 290 42.8
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.7e-45 186.8 246 46.3
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 2.2e-45 186.4 289 44.6
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 2.9e-45 186.0 288 43.1
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 2.9e-45 186.0 289 43.9
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 4.9e-45 185.3 256 45.7
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 4.9e-45 185.3 262 46.2
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 4.9e-45 185.3 253 46.6
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 8.4e-45 184.5 262 46.2
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.1e-44 184.1 280 45.0
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 1.9e-44 183.3 256 44.1
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 7.1e-44 181.4 257 46.3
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 1.2e-43 180.6 286 43.0
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 2.7e-43 179.5 254 46.1
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.3e-42 177.2 219 47.9
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.0e-42 176.0 265 44.2
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.5e-41 173.7 265 43.8
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 1.9e-41 173.3 253 43.9
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 4.3e-41 172.2 269 43.5
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.1e-40 169.9 260 44.2
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 3.7e-40 169.1 266 42.5
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 4.0e-39 165.6 267 42.3
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.2e-38 164.1 218 46.8
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 5.8e-38 161.8 185 48.6
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 7.6e-38 161.4 218 46.3
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 4.9e-37 158.7 221 46.2
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.2e-36 156.0 259 42.1
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 4.2e-36 155.6 323 37.5
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.0e-35 151.8 198 46.5
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 6.0e-35 151.8 270 37.8
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.3e-34 150.6 264 39.8
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 1.8e-34 150.2 181 50.8
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-32 142.9 257 38.5
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.2e-32 141.4 166 48.2
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.2e-32 141.4 166 48.2
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-31 140.6 259 38.6
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 5.3e-31 138.7 308 35.1
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 5.3e-31 138.7 160 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 1.6e-27 127.1 248 36.3
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.3e-26 123.2 189 43.9
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.5e-25 120.6 214 39.7
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.4e-22 109.4 186 39.2
SEGI_13482 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 7.7e-22 108.2 164 39.6
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 1.2e-19 100.9 255 36.1
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 2.5e-17 93.2 252 31.7
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 5.7e-17 92.0 229 34.9
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 1.7e-16 90.5 172 39.0
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 8.2e-16 88.2 177 36.7
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 3.1e-15 86.3 287 29.6
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 6.9e-15 85.1 188 32.4
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 1.2e-14 84.3 110 45.5
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.0e-13 79.0 266 30.5
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 2.5e-12 76.6 271 30.3
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 9.4e-12 74.7 108 49.1
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 1.2e-11 74.3 228 30.3
SEGI_10710 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.3e-10 70.1 47 72.3
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 5.1e-10 68.9 87 49.4
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 5.1e-10 68.9 87 49.4
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 6.7e-10 68.6 84 51.2
SEGI_36975 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 6.7e-10 68.6 78 41.0
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 2.0e-09 67.0 85 49.4
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 2.0e-09 67.0 81 50.6
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 3.3e-09 66.2 125 31.2
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 5.7e-09 65.5 171 32.2
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 1.3e-08 64.3 234 27.8
C08p20140 Brassica napus HOM05D012846 ORTHO05D016740 1.8e-07 60.5 33 84.8
BcaC01g02515 Brassica carinata HOM05D012846 ORTHO05D039543 4.1e-07 59.3 60 53.3
C03p63990 Brassica napus HOM05D012846 ORTHO05D039543 4.1e-07 59.3 60 53.3
BolC3t18653H Brassica oleracea HOM05D012846 ORTHO05D016740 4.1e-07 59.3 60 53.3
SEGI_00747 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.3e-07 58.9 81 38.3
SEGI_09691 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 5.3e-07 58.9 81 38.3
BcaC04g18815 Brassica carinata HOM05D012846 ORTHO05D016740 1.5e-06 57.4 60 53.3
A07p09770 Brassica napus HOM05D012846 ORTHO05D016740 4.5e-06 55.8 60 51.7
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 7.7e-06 55.1 225 29.3


User provided reference genes

Program Settings