Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 7.8e-106 387.1 191 100.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 1.8e-54 216.5 180 67.2
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 4.5e-53 211.8 180 64.4
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 6.5e-52 208.0 180 63.9
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.9e-48 196.4 184 62.0
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 1.9e-48 196.4 175 62.3
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.9e-48 196.4 176 62.5
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.1e-46 190.7 174 61.5
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 7.6e-45 184.5 187 59.9
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-41 173.7 164 62.2
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.2e-34 150.6 95 74.7
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 4.1e-30 135.6 193 43.0
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.2e-28 129.8 93 62.4
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.6e-26 123.6 137 47.4
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 3.0e-25 119.4 166 40.4
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 3.9e-25 119.0 176 38.6
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 8.8e-25 117.9 183 40.4
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 1.5e-24 117.1 166 39.8
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.5e-24 117.1 180 39.4
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 1.3e-23 114.0 176 40.9
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 2.2e-23 113.2 166 39.8
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.2e-23 113.2 98 53.1
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 2.8e-23 112.8 186 40.3
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 3.7e-23 112.5 174 37.9
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 8.2e-23 111.3 194 38.1
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 3.1e-22 109.4 174 39.7
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 3.1e-22 109.4 198 35.9
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 5.3e-22 108.6 99 44.4
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 5.3e-22 108.6 181 36.5
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 1.2e-21 107.5 101 49.5
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 2.6e-21 106.3 170 35.9
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 7.7e-21 104.8 88 52.3
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 7.7e-21 104.8 141 41.8
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 1.0e-20 104.4 89 56.2
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 1.7e-20 103.6 181 35.4
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 2.2e-20 103.2 90 54.4
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 2.9e-20 102.8 99 49.5
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 6.5e-20 101.7 142 40.8
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 6.5e-20 101.7 90 51.1
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 6.5e-20 101.7 88 50.0
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.1e-19 100.9 85 51.8
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 1.9e-19 100.1 83 53.0
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 1.9e-19 100.1 95 48.4
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 2.5e-19 99.8 81 55.6
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.2e-19 99.4 91 49.5
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 4.2e-19 99.0 102 47.1
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 5.5e-19 98.6 176 35.8
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 7.2e-19 98.2 177 36.7
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 9.4e-19 97.8 117 42.7
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 1.2e-18 97.4 153 36.6
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 2.1e-18 96.7 115 40.0
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 2.1e-18 96.7 159 35.2
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 2.7e-18 96.3 90 47.8
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 3.6e-18 95.9 81 53.1
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 4.7e-18 95.5 105 46.7
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 4.7e-18 95.5 194 32.5
Thhalv10009231m.g Eutrema salsugineum HOM05D002847 ORTHO05D010012 8.0e-18 94.7 84 65.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.0e-17 94.4 84 51.2
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 1.0e-17 94.4 112 42.0
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.4e-17 94.0 97 44.3
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 1.4e-17 94.0 85 49.4
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.4e-17 94.0 89 49.4
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 1.4e-17 94.0 155 31.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 3.0e-17 92.8 145 40.0
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 5.2e-17 92.0 93 46.2
HanXRQChr16g0500081 Helianthus annuus HOM05D000399 ORTHO05D010012 5.2e-17 92.0 87 47.1
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 5.2e-17 92.0 173 34.7
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 6.7e-17 91.7 93 47.3
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 8.8e-17 91.3 88 51.1
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 1.2e-16 90.9 80 47.5
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 1.5e-16 90.5 92 48.9
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 1.5e-16 90.5 210 30.0
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 2.0e-16 90.1 111 37.8
Lsat_1_v5_gn_4_85921 Lactuca sativa HOM05D000399 ORTHO05D010012 2.6e-16 89.7 85 50.6
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 2.6e-16 89.7 88 48.9
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.6e-16 89.7 93 45.2
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.6e-16 89.7 86 45.3
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.3e-16 89.4 83 44.6
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 3.3e-16 89.4 77 51.9
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.3e-16 89.4 83 51.8
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 3.3e-16 89.4 85 45.9
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.3e-16 89.4 93 45.2
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.4e-16 89.0 83 51.8
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.4e-16 89.0 81 48.1
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 4.4e-16 89.0 91 45.1
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.7e-16 88.6 81 48.1
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.7e-16 88.6 81 48.1
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 5.7e-16 88.6 97 44.3
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 7.5e-16 88.2 82 52.4
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 7.5e-16 88.2 93 40.9
ECA232G1568 Erigeron canadensis HOM05D000399 ORTHO05D010012 7.5e-16 88.2 90 46.7
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 9.7e-16 87.8 102 42.2
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.3e-15 87.4 107 40.2
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 1.3e-15 87.4 109 41.3
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.7e-15 87.0 90 46.7
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.7e-15 87.0 90 46.7
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.7e-15 87.0 73 52.1
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 2.2e-15 86.7 86 45.3
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 2.2e-15 86.7 77 51.9
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 2.8e-15 86.3 83 47.0
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 2.8e-15 86.3 83 47.0
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.8e-15 86.3 115 38.3
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 2.8e-15 86.3 133 36.8
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.7e-15 85.9 86 47.7
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 3.7e-15 85.9 81 49.4
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.8e-15 85.5 174 31.6
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 6.3e-15 85.1 83 45.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 6.3e-15 85.1 175 32.6
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 1.1e-14 84.3 111 36.0
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.1e-14 84.3 79 49.4
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.1e-14 84.3 94 41.5
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-14 83.2 102 41.2
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 2.4e-14 83.2 93 43.0
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 2.4e-14 83.2 90 42.2
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.1e-14 82.8 85 43.5
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.1e-14 82.8 104 40.4
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 3.1e-14 82.8 141 36.9
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 3.1e-14 82.8 82 48.8
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.1e-14 82.4 102 40.2
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 4.1e-14 82.4 81 48.1
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 5.3e-14 82.0 91 41.8
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 7.0e-14 81.6 81 44.4
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 9.1e-14 81.3 95 44.2
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 9.1e-14 81.3 81 43.2
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.6e-13 80.5 111 36.9
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.6e-13 80.5 78 46.2
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 1.6e-13 80.5 78 47.4
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.0e-13 80.1 102 39.2
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 2.0e-13 80.1 118 36.4
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 2.0e-13 80.1 89 42.7
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.7e-13 79.7 108 38.0
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 2.7e-13 79.7 83 41.0
Aa31LG1G14290 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.5e-13 79.3 89 42.7
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 3.5e-13 79.3 80 46.2
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 4.5e-13 79.0 140 32.1
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 4.5e-13 79.0 89 40.4
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.5e-13 79.0 109 37.6
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 4.5e-13 79.0 95 41.1
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 7.7e-13 78.2 81 45.7
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.0e-12 77.8 87 41.4
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 1.3e-12 77.4 145 34.5
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.3e-12 77.4 81 38.3
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.3e-12 77.4 113 36.3
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.7e-12 77.0 85 41.2
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 1.7e-12 77.0 81 44.4
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 2.9e-12 76.3 138 32.6
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 5.0e-12 75.5 83 42.2
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.5e-12 75.1 86 39.5
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 6.5e-12 75.1 118 34.7
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 8.5e-12 74.7 82 43.9
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 8.5e-12 74.7 142 33.8
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.5e-11 73.9 102 38.2
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 1.9e-11 73.6 85 43.5
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 2.5e-11 73.2 80 43.8
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 3.2e-11 72.8 80 41.2
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 4.2e-11 72.4 82 40.2
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 7.2e-11 71.6 102 37.3
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 7.2e-11 71.6 85 37.6
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.2e-10 70.9 85 38.8
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.1e-10 70.1 119 37.0
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.7e-10 69.7 105 37.1
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 4.7e-10 68.9 83 39.8
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 5.2e-09 65.5 92 37.0
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 5.2e-09 65.5 82 42.7
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 8.8e-09 64.7 80 41.2
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-08 64.3 91 38.5
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-08 64.3 91 38.5
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 2.0e-08 63.5 115 33.9
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 2.0e-08 63.5 53 58.5
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 3.4e-08 62.8 115 33.9
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 9.8e-08 61.2 80 38.8
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 2.2e-07 60.1 64 37.5
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 4.8e-07 58.9 59 35.6
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 4.8e-07 58.9 148 31.1
AT1G80650 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 1.8e-06 57.0 134 32.1
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 5.4e-06 55.5 50 60.0


User provided reference genes

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