Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1868.6 970 100.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1768.8 985 93.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1765.0 972 94.7
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1763.4 974 93.6
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1756.5 988 93.6
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1756.5 988 93.6
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1741.9 980 92.7
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1731.1 983 92.4
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1726.8 974 92.4
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1689.1 971 89.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1627.8 972 86.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1601.6 972 86.1
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1493.8 968 79.6
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 966 78.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 970 78.2
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 968 78.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 976 77.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1472.2 969 77.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1466.8 969 78.5
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1461.8 969 78.7
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 918 79.2
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 973 77.8
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1459.5 970 76.4
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1458.4 968 76.9
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 976 77.0
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 974 75.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 966 76.9
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1452.6 972 75.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1452.6 968 76.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1451.8 972 75.8
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1451.0 922 77.8
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 973 76.9
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 994 76.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 969 75.6
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 975 76.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 966 76.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 971 76.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 966 76.2
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1448.7 969 76.4
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 976 76.5
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 967 76.1
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1445.6 968 75.5
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1445.3 966 77.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 968 77.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 966 76.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 966 75.7
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 972 76.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 972 76.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1440.2 967 75.2
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 970 76.4
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1438.3 966 74.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1437.2 966 77.3
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 968 75.8
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 967 74.7
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1433.3 920 77.3
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 968 74.8
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 974 76.5
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1430.6 967 75.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1429.5 965 76.9
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1429.5 966 75.5
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 969 75.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 966 76.4
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1426.4 971 74.6
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 920 77.4
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1422.1 967 75.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 969 75.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1419.4 969 75.7
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 987 73.9
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 973 75.6
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 972 75.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 975 75.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1410.6 968 74.8
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 966 74.6
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1406.3 972 73.9
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1404.8 967 74.3
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1404.0 966 74.1
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1403.7 967 74.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1398.3 997 70.9
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1396.7 967 75.7
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1396.3 966 73.9
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1395.2 974 74.0
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1394.0 967 74.4
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 970 75.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1388.2 971 73.6
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1383.6 922 74.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1382.1 931 72.5
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1377.5 927 73.7
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1374.8 992 70.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1373.6 976 72.6
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1371.7 974 72.8
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1360.5 957 73.7
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1350.5 967 72.7
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1349.0 969 72.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1349.0 1191 62.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1342.4 916 75.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1340.1 973 69.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1336.2 964 70.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1326.6 930 72.6
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1326.2 850 76.6
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1317.4 969 67.5
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1312.4 966 69.2
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1309.7 963 69.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1304.3 839 76.0
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1294.3 976 69.5
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1292.3 932 69.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1262.7 918 68.2
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1258.4 938 68.9
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1255.7 935 68.6
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1249.6 786 79.5
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1238.8 965 65.9
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1231.1 784 77.9
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1173.7 935 62.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1167.9 727 78.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1162.9 787 71.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1101.7 953 60.0
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1099.0 986 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 2.7e-311 1072.0 988 56.8
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 1.8e-307 1059.3 696 75.6
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 6.8e-307 1057.4 965 59.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 5.6e-301 1037.7 978 55.5
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 3.0e-294 1015.4 722 73.4
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.0e-278 963.8 663 73.3
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.9e-272 943.0 787 59.1
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-258 896.0 675 70.1
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.9e-257 892.5 593 75.7
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.9e-232 810.1 569 72.6
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 5.0e-225 785.4 533 73.9
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.5e-216 757.3 608 66.3
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.7e-204 717.2 510 70.0
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.6e-194 684.1 443 80.4
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.5e-176 624.4 386 78.0
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.3e-172 608.6 405 79.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 2.5e-168 597.0 1050 37.1
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.0e-141 507.7 422 60.7
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.4e-139 501.5 825 37.7
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.2e-138 498.4 416 60.1
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 3.4e-117 427.2 402 57.5
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.8e-110 404.8 253 76.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 9.4e-107 392.5 224 84.4
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.1e-104 385.6 1055 27.4
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 2.6e-104 384.4 279 69.2
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.3e-103 379.8 842 32.4
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 7.7e-93 346.3 253 68.0
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 7.7e-93 346.3 253 68.0
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.0e-85 321.6 259 64.9
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.7e-85 321.2 365 44.7
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.4e-80 304.3 300 55.7
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 3.7e-55 221.1 146 71.2
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.2e-50 206.1 169 52.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.8e-49 202.2 159 61.0
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.8e-49 202.2 159 61.0
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.1e-46 191.0 258 47.7
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 4.1e-46 191.0 139 64.7
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 3.6e-42 177.9 1036 21.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-41 175.3 118 69.5
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.3e-39 169.5 99 82.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 4.9e-39 167.5 104 79.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 3.5e-37 161.4 141 61.0
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 4.6e-37 161.0 142 52.1
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 7.3e-35 153.7 168 49.4
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 142.9 76 82.9
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.7e-31 142.5 76 84.2
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.9e-31 141.7 79 81.0
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.8e-31 141.4 76 81.6
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.8e-31 141.4 115 64.3
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.7e-29 135.2 80 75.0
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.5e-29 134.8 127 57.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 3.5e-29 134.8 88 75.0
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.6e-29 134.4 84 75.0
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.5e-24 119.4 138 45.7
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.4e-24 118.2 65 84.6
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 7.6e-24 117.1 79 75.9
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.1e-21 109.0 143 49.0
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 5.6e-19 100.9 116 47.4
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 3.7e-18 98.2 128 46.1
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.0e-15 90.1 134 41.8
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.9e-14 85.9 82 53.7
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.8e-10 71.2 56 58.9
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 3.8e-07 61.6 39 61.5
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 5.5e-06 57.8 139 39.6


User provided reference genes

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