Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 8.3e-177 623.6 321 100.0
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.8e-163 579.3 324 92.6
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.5e-162 576.2 324 91.4
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.0e-162 575.9 323 91.3
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 4.4e-162 574.7 324 92.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.4e-162 574.7 325 91.7
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-161 573.2 324 91.4
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 2.9e-161 572.0 325 90.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.4e-160 568.9 323 90.4
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.6e-159 566.2 325 89.2
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.6e-146 520.8 325 79.7
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 6.4e-145 517.7 323 80.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.1e-144 514.2 335 77.9
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.8e-126 456.4 322 77.0
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 1.8e-126 456.4 321 71.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.6e-125 451.4 322 69.9
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.6e-125 451.4 322 70.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 4.8e-124 448.4 324 70.7
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.1e-124 447.6 324 70.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 6.9e-123 444.5 322 69.9
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 6.9e-123 444.5 319 70.5
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.0e-122 443.0 332 70.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.6e-122 442.6 324 70.1
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 4.5e-122 441.8 325 75.1
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.1e-120 434.5 327 66.1
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.6e-119 433.3 327 66.1
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.1e-119 433.0 327 67.0
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 4.6e-119 431.8 328 65.9
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 7.9e-119 431.0 327 66.4
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.8e-118 429.9 319 66.1
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.1e-118 428.3 327 65.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.5e-117 426.8 318 72.3
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.9e-117 426.4 345 64.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 3.3e-117 425.6 322 66.5
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-116 423.7 327 64.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.6e-116 423.3 329 64.4
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.1e-116 422.9 329 64.4
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.1e-116 422.9 327 65.4
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 4.8e-116 421.8 328 65.5
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 6.2e-116 421.4 321 65.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 6.2e-116 421.4 328 64.3
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 6.2e-116 421.4 330 65.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.1e-115 420.6 324 66.4
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.1e-115 420.6 318 65.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.8e-115 419.9 318 64.5
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.4e-115 419.5 327 65.1
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.4e-115 419.5 319 64.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.1e-115 419.1 320 65.0
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 3.1e-115 419.1 325 65.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 3.1e-115 419.1 328 66.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.9e-115 417.9 327 63.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 9.0e-115 417.5 320 65.6
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.0e-115 417.5 322 64.3
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-114 416.4 315 66.7
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.0e-114 416.4 326 65.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.6e-114 416.0 320 65.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.6e-114 416.0 324 66.0
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.4e-114 415.6 320 64.7
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.8e-114 414.8 330 65.2
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.8e-114 414.8 329 62.6
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 64.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 64.5
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 64.2
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.2e-113 412.9 321 64.8
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 3.8e-113 412.1 329 62.3
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.9e-113 411.8 327 63.9
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.9e-113 411.8 330 63.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 4.9e-113 411.8 326 62.0
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.5e-113 411.4 330 64.5
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.1e-112 410.6 325 63.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.4e-112 410.2 327 63.9
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.4e-112 410.2 357 59.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.9e-112 409.8 327 63.9
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.5e-112 409.5 330 64.2
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.2e-112 409.1 317 72.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 9.3e-112 407.5 330 63.9
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.5e-111 405.6 330 63.9
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 6.0e-111 404.8 322 62.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 6.0e-111 404.8 362 57.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 3.0e-110 402.5 293 67.9
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 5.1e-110 401.7 326 61.3
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 6.7e-110 401.4 322 64.9
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.1e-109 400.6 327 61.5
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.1e-109 400.6 320 62.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.5e-109 400.2 354 58.8
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.5e-109 400.2 313 63.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.5e-109 399.4 320 61.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 5.7e-109 398.3 315 64.1
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 7.4e-109 397.9 318 61.9
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.3e-108 397.1 326 62.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.3e-108 397.1 328 63.7
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.2e-108 396.4 322 64.0
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.8e-108 395.2 326 62.6
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 8.2e-108 394.4 326 62.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.8e-107 393.3 325 61.5
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.8e-107 393.3 312 63.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.9e-107 391.3 327 61.2
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.0e-105 387.5 319 60.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.2e-105 386.3 276 69.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.4e-104 383.6 322 60.9
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.2e-104 382.5 330 58.8
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 6.1e-103 378.3 398 52.5
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.5e-101 372.9 326 57.4
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 2.6e-98 362.8 326 57.1
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 8.5e-97 357.8 270 65.9
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-96 357.1 326 57.1
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 7.2e-96 354.8 314 59.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 7.9e-95 351.3 326 55.8
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 3.9e-94 349.0 327 53.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 8.8e-94 347.8 327 56.0
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.7e-87 326.2 323 54.8
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 3.9e-86 322.4 324 53.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.0e-85 320.1 323 58.5
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-82 310.8 178 89.9
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.3e-78 296.6 320 46.9
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.4e-77 292.4 325 51.7
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.7e-76 289.3 309 47.6
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 3.5e-74 282.7 277 56.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 1.3e-73 280.8 316 49.7
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 7.5e-69 265.0 177 74.6
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.8e-67 260.4 277 46.6
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.7e-60 237.3 193 60.6
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.4e-59 232.3 307 41.4
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-58 229.9 260 49.6
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.0e-57 228.0 317 43.2
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.3e-56 223.0 192 58.3
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.3e-52 211.1 197 55.3
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.9e-52 209.9 186 60.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.9e-48 197.2 142 64.8
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 9.5e-48 194.9 131 70.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.4e-46 191.0 133 66.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.8e-46 188.7 138 68.1
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.7e-44 183.0 155 62.6
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.4e-44 182.2 156 57.7
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 6.4e-44 182.2 268 40.7
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.1e-43 179.5 131 65.6
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 9.2e-43 178.3 139 61.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 5.1e-41 172.6 256 37.9
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.2e-39 167.9 263 36.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.7e-39 166.0 215 46.5
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.1e-38 163.3 146 54.1
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 7.6e-37 158.7 128 61.7
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-36 157.9 93 90.3
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-36 157.9 93 90.3
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 4.1e-35 152.9 93 88.2
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.6e-34 149.4 174 46.6
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.5e-32 144.4 199 39.7
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.3e-32 142.1 140 49.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 2.8e-31 140.2 116 72.4
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 8.1e-31 138.7 129 54.3
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 4.4e-29 132.9 114 58.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 4.9e-28 129.4 126 50.0
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.9e-27 127.5 195 37.9
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.2e-27 126.7 99 63.6
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 6.0e-26 122.5 79 67.1
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.3e-24 116.7 117 48.7
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.0e-21 107.5 68 72.1
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 7.8e-18 95.5 61 85.2
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-16 91.7 60 78.3
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-16 90.9 187 35.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 3.2e-11 73.6 60 63.3
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 2.7e-10 70.5 45 77.8


User provided reference genes

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