Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 9.4e-197 691.4 933 100.0
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.2e-183 647.9 933 98.1
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.7e-161 573.2 335 89.0
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 5.3e-123 446.4 945 65.9
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 3.3e-117 427.2 940 74.3
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 7.2e-104 382.9 341 63.6
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.9e-101 374.8 346 62.7
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.5e-101 374.4 332 64.8
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 5.7e-101 373.2 339 66.1
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 5.7e-101 373.2 357 61.1
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.9e-97 360.9 348 61.8
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 3.8e-97 360.5 351 61.0
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 5.5e-96 356.7 350 60.3
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.4e-94 352.1 343 58.6
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.4e-93 347.1 335 57.9
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.8e-91 341.7 377 56.5
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.8e-91 341.7 337 56.4
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.4e-91 341.3 382 55.2
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.4e-91 341.3 296 62.2
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.4e-91 341.3 266 67.3
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.5e-90 338.6 336 55.4
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.5e-90 338.6 291 63.2
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 7.7e-90 336.3 352 58.5
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.7e-89 335.1 341 54.8
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.7e-89 335.1 250 66.8
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 8.5e-89 332.8 288 65.6
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.5e-88 331.3 328 62.2
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.2e-88 330.9 347 55.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 3.2e-88 330.9 354 57.3
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 9.4e-88 329.3 324 60.5
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 2.1e-87 328.2 304 62.8
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.0e-86 325.9 350 55.7
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.0e-86 325.9 269 67.3
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 2.3e-86 324.7 360 56.9
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 3.9e-86 323.9 352 52.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 5.2e-86 323.6 339 56.9
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.5e-85 322.0 348 56.9
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 3.3e-85 320.9 230 73.0
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.3e-84 318.9 354 56.5
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.3e-84 318.9 326 56.1
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.7e-84 318.5 344 53.5
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.7e-84 318.5 337 59.1
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 4.8e-84 317.0 328 60.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 6.3e-84 316.6 334 58.7
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.3e-84 316.6 258 65.9
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.3e-84 316.6 258 65.9
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.3e-84 316.6 317 56.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 6.3e-84 316.6 335 56.7
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 8.2e-84 316.2 233 69.5
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 8.2e-84 316.2 193 75.6
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.4e-83 315.5 336 56.0
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.4e-83 315.5 334 58.4
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.4e-83 315.5 274 65.0
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.4e-83 314.7 294 58.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.4e-83 314.7 342 54.4
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.1e-83 314.3 295 60.3
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 5.3e-83 313.5 315 59.0
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 9.1e-83 312.8 316 58.9
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 3.5e-82 310.8 280 62.5
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.9e-82 310.1 341 56.3
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 5.9e-82 310.1 266 66.2
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.3e-81 308.9 279 61.3
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.3e-81 308.9 329 58.1
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.7e-81 308.5 315 57.1
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 2.2e-81 308.1 748 97.2
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 8.5e-81 306.2 315 53.7
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.5e-81 306.2 322 56.5
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.1e-80 305.8 347 53.6
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.1e-80 305.8 357 54.6
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.1e-80 305.8 245 66.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.9e-80 305.1 320 56.9
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.2e-80 303.9 245 66.1
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.4e-80 302.8 258 63.6
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 9.4e-80 302.8 245 65.7
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 9.4e-80 302.8 352 52.3
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 4.7e-79 300.4 317 57.4
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-78 298.1 278 61.9
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.5e-77 295.4 280 58.9
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.6e-77 294.7 303 58.1
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 5.7e-77 293.5 240 67.1
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 5.7e-77 293.5 318 55.7
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 7.5e-77 293.1 338 52.1
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.3e-76 292.4 337 52.8
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.3e-76 292.4 319 56.4
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.7e-76 292.0 346 50.9
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.2e-76 291.6 247 64.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.2e-76 291.6 265 61.9
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 3.1e-75 287.7 330 52.4
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 3.5e-74 284.3 335 53.7
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.0e-73 282.7 330 52.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.2e-71 275.8 308 50.3
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.9e-64 251.9 242 56.6
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.2e-64 250.8 142 85.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.2e-63 249.2 189 65.6
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.7e-63 247.3 369 47.4
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 4.7e-63 247.3 329 48.9
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 7.5e-61 240.0 302 48.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.2e-58 232.6 151 74.2
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.9e-58 230.3 165 67.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 5.6e-56 223.8 131 82.4
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.0e-54 219.5 114 93.0
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 7.0e-51 206.8 187 51.9
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.0e-49 203.0 186 60.2
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 7.3e-48 196.8 127 76.4
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 6.2e-47 193.7 183 49.7
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.4e-46 192.6 117 82.9
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 7.0e-43 180.3 191 46.6
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-36 159.5 331 41.4
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.9e-36 157.5 191 40.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.4e-36 157.1 182 44.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.4e-35 155.2 182 44.0
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.6e-34 152.5 111 70.3
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.3e-33 149.4 104 72.1
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.9e-32 145.6 198 42.4
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 2.8e-31 141.7 114 68.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.6e-31 141.4 91 72.5
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.1e-30 138.3 85 77.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.0e-29 135.6 109 64.2
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 9.9e-29 133.3 119 62.2
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.3e-28 132.9 105 64.8
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.3e-28 132.9 111 61.3
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.3e-28 132.9 79 77.2
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 7.1e-27 127.1 109 59.6
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.0e-25 123.2 78 64.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.0e-25 121.7 109 60.6
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 1.9e-24 119.0 74 71.6
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 4.3e-24 117.9 236 41.1
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.6e-23 114.8 81 63.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.1e-22 113.2 105 58.1
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.3e-17 95.5 70 68.6
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 5.3e-14 84.3 46 82.6
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.4e-13 81.6 147 35.4
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-12 79.7 76 57.9
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 4.2e-11 74.7 45 73.3
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.3e-09 69.7 45 75.6
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.8e-09 69.3 81 51.9
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 4.0e-06 58.2 92 35.9
CDE11G0470 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 4.0e-06 58.2 97 36.1
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 4.0e-06 58.2 147 31.3
CDE05G1401 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 5.3e-06 57.8 97 36.1
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 5.3e-06 57.8 182 28.0
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 6.9e-06 57.4 149 32.2


User provided reference genes

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