Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 0.0e+00 1240.7 625 100.0
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 0.0e+00 1224.9 625 98.6
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 3.3e-286 988.0 639 80.1
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 3.6e-285 984.6 630 77.6
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 9.8e-283 976.5 628 75.6
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 7.0e-281 970.3 629 76.0
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 2.7e-280 968.4 632 75.6
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 3.9e-279 964.5 628 75.5
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 6.6e-279 963.8 628 75.0
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 4.0e-276 954.5 629 74.6
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 1.5e-275 952.6 628 74.2
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 3.4e-275 951.4 626 75.4
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 4.9e-274 947.6 662 71.8
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 2.4e-273 945.3 628 76.4
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 9.2e-273 943.3 636 73.1
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 2.0e-272 942.2 625 73.9
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 3.5e-272 941.4 629 73.4
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 5.0e-271 937.6 627 74.0
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 1.9e-270 935.6 626 73.3
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 1.6e-269 932.6 629 73.3
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 4.7e-269 931.0 630 72.7
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 4.7e-269 931.0 626 72.2
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 1.1e-268 929.9 628 72.8
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 5.2e-268 927.5 630 72.2
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 8.3e-266 920.2 720 66.1
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.1e-265 919.8 628 72.5
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 5.4e-265 917.5 630 71.3
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.4e-265 917.5 602 75.1
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 4.6e-264 914.4 626 71.9
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.3e-263 912.9 626 72.8
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 1.7e-263 912.5 628 71.8
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 6.6e-263 910.6 630 71.9
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 8.6e-263 910.2 629 72.3
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 5.2e-260 901.0 626 70.8
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 5.8e-259 897.5 628 70.1
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 5.8e-259 897.5 627 70.5
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.6e-259 897.1 628 70.1
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 2.4e-257 892.1 631 69.9
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 4.6e-256 887.9 608 71.7
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.0e-255 886.7 625 70.7
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 3.9e-255 884.8 630 70.0
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 2.1e-253 879.0 630 68.1
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 2.8e-253 878.6 635 69.4
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 1.1e-252 876.7 625 69.9
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 7.6e-251 870.5 587 76.8
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.6e-248 862.8 631 68.0
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.3e-247 859.8 624 67.0
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 1.1e-246 856.7 623 67.1
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 4.3e-246 854.7 624 66.0
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 7.3e-246 854.0 639 71.0
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 2.1e-245 852.4 626 68.4
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 2.8e-245 852.0 625 66.4
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 8.1e-245 850.5 627 67.9
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 4.0e-244 848.2 624 66.0
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 1.2e-243 846.7 624 66.0
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 3.4e-243 845.1 626 66.9
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 2.9e-242 842.0 624 65.7
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 6.4e-242 840.9 623 66.3
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.4e-241 839.7 625 65.8
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 2.4e-241 839.0 624 65.4
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 9.3e-241 837.0 630 66.2
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 4.3e-238 828.2 630 64.1
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 2.1e-237 825.9 625 71.5
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 6.9e-236 820.8 639 65.3
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.2e-235 820.1 638 65.2
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.0e-235 819.3 586 69.8
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 2.6e-235 818.9 629 66.1
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.4e-235 818.5 627 66.2
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 3.2e-233 812.0 494 80.8
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.0e-231 807.0 586 70.6
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 3.0e-231 805.4 630 62.9
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 2.5e-230 802.4 627 63.6
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 6.2e-229 797.7 649 63.3
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 1.8e-228 796.2 624 63.3
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 3.4e-227 792.0 641 64.6
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 2.5e-225 785.8 641 63.7
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 5.1e-223 778.1 740 58.4
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 6.7e-215 751.1 627 62.4
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.1e-214 750.4 610 62.8
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 4.8e-213 745.0 629 62.8
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 2.9e-194 682.6 653 58.0
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.4e-191 673.7 427 78.2
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 5.4e-180 635.2 626 51.6
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.1e-164 584.3 436 65.4
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 6.0e-163 578.6 568 51.1
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 7.8e-163 578.2 569 51.5
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.9e-156 557.0 287 95.8
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 1.8e-151 540.4 441 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 6.0e-147 525.4 637 45.5
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 1.4e-140 504.2 566 50.5
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 3.2e-140 503.1 624 43.8
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.0e-134 483.8 626 42.2
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 6.4e-133 478.8 624 44.9
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 8.4e-133 478.4 308 76.3
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 4.6e-115 419.5 295 69.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.8e-114 417.5 274 74.5
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 3.7e-112 409.8 362 59.1
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.0e-109 401.7 284 67.6
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 6.5e-93 345.9 272 63.2
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.1e-89 335.1 230 73.0
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.7e-88 330.1 244 66.4
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 5.0e-85 319.7 227 70.5
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 2.2e-80 304.3 241 66.4
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 5.5e-76 289.7 249 60.2
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 8.6e-61 239.2 699 29.3
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 4.7e-59 233.4 185 65.9
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 4.0e-58 230.3 156 70.5
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 6.3e-56 223.0 167 67.1
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 5.9e-54 216.5 171 64.3
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.1e-47 195.7 616 28.2
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.6e-46 191.8 134 72.4
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 5.0e-45 186.8 177 58.8
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 2.2e-40 171.4 134 63.4
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 8.1e-35 152.9 700 25.7
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.8e-34 151.8 105 66.7
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 1.4e-31 142.1 118 58.5
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.1e-26 125.9 92 65.2
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.0e-21 107.8 74 62.2
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 3.6e-19 100.9 125 43.2
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 3.1e-18 97.8 78 62.8
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 4.4e-17 94.0 57 73.7
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 2.2e-16 91.7 77 57.1
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 6.0e-14 83.6 46 87.0
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.6e-11 75.5 65 56.9
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.1e-11 75.1 77 55.8
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.6e-11 74.3 48 70.8
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.6e-11 74.3 65 50.8
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 5.3e-10 70.5 75 52.0


User provided reference genes

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