Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.6e-180 636.0 326 100.0
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.5e-178 627.9 326 98.8
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 5.8e-178 627.5 326 98.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.0e-161 571.2 326 89.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 9.7e-157 557.0 326 86.5
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.6e-156 556.2 326 86.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 3.7e-148 528.5 321 84.1
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.7e-130 467.6 328 74.1
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.9e-129 465.7 327 73.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.9e-128 463.0 328 72.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.5e-128 461.5 328 72.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.2e-127 460.3 329 72.0
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.1e-127 459.5 327 73.4
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.4e-126 456.8 330 72.7
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.8e-126 454.5 331 71.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 6.8e-126 454.5 327 73.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 8.8e-126 454.1 345 71.0
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.4e-125 452.2 326 72.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.3e-124 450.3 330 69.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 1.4e-123 446.8 324 72.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.4e-123 446.0 327 69.4
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 7.0e-123 444.5 327 71.3
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.0e-123 444.5 326 70.9
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 9.1e-123 444.1 329 69.9
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 69.0
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 1.2e-122 443.7 326 69.9
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.0e-122 443.0 327 68.2
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.7e-122 442.6 353 67.4
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.7e-122 442.6 329 70.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.5e-122 442.2 327 69.1
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 3.5e-122 442.2 326 69.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 5.9e-122 441.4 327 67.9
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 7.7e-122 441.0 293 77.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.7e-121 439.9 359 66.9
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 5.0e-121 438.3 329 69.0
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 6.5e-121 438.0 327 68.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 8.6e-121 437.6 330 70.0
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 8.6e-121 437.6 329 69.6
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.5e-120 436.0 327 68.8
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 2.5e-120 436.0 328 68.9
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 4.2e-120 435.3 328 66.5
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 4.2e-120 435.3 329 67.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 4.2e-120 435.3 327 69.4
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 7.2e-120 434.5 322 72.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.1e-119 433.0 328 67.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.8e-119 432.6 327 67.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.8e-119 432.6 329 68.4
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.8e-119 432.6 327 68.8
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.6e-119 432.2 326 68.4
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 4.7e-119 431.8 326 67.8
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.1e-119 431.4 329 68.7
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 8.0e-119 431.0 332 66.3
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 8.0e-119 431.0 327 66.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.0e-118 430.6 362 65.2
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.8e-118 429.9 329 69.0
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.3e-118 429.5 329 69.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.3e-118 429.5 331 66.8
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.3e-118 429.5 329 66.6
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.2e-118 428.3 328 67.4
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.8e-118 427.9 328 66.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-117 427.2 329 68.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-117 427.2 329 68.4
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.0e-117 426.4 326 66.3
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.0e-117 426.4 325 67.7
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.0e-117 426.4 326 66.6
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 5.7e-117 424.9 332 65.7
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.2e-116 422.9 325 67.7
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.8e-116 422.5 328 65.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.3e-116 421.0 328 67.4
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.0e-115 417.9 328 66.8
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.7e-114 416.0 331 65.9
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.7e-114 416.0 328 66.5
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 2.7e-114 416.0 328 68.0
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.7e-114 416.0 328 64.6
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 4.5e-114 415.2 325 65.5
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 4.5e-114 415.2 326 69.0
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.0e-113 414.1 325 65.5
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 1.3e-113 413.7 327 67.6
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 3.8e-113 412.1 329 66.9
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 8.6e-113 411.0 321 66.4
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.1e-112 410.6 325 65.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.9e-112 409.8 276 76.1
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 7.3e-112 407.9 398 57.0
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.8e-111 406.0 327 65.1
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 3.6e-111 405.6 327 64.5
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.6e-111 405.6 325 64.0
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.7e-111 405.2 325 64.3
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 4.7e-111 405.2 327 63.9
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.8e-110 403.3 325 64.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.8e-110 403.3 325 64.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 3.0e-110 402.5 326 65.6
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.2e-110 401.7 326 61.7
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.3e-108 397.1 326 64.1
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 1.7e-108 396.7 326 62.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 2.2e-108 396.4 336 60.4
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.5e-106 389.0 326 63.2
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 4.6e-106 388.7 326 61.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 6.6e-105 384.8 326 63.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-104 384.0 325 60.6
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 9.5e-104 380.9 328 63.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.1e-103 379.8 323 62.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 8.0e-103 377.9 271 72.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.2e-100 369.8 323 59.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-99 367.1 324 60.5
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.5e-96 357.1 331 58.9
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 2.2e-92 343.2 327 57.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 1.8e-86 323.6 326 55.2
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 4.9e-84 315.5 327 53.5
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 5.4e-83 312.0 316 53.2
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.0e-82 308.5 322 50.9
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 7.8e-82 308.1 327 56.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 7.8e-82 308.1 322 54.0
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.7e-81 307.0 276 61.2
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.9e-81 305.8 322 54.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 6.6e-81 305.1 322 52.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.4e-77 292.4 316 52.5
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.8e-76 289.3 320 48.4
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 7.3e-72 275.0 177 79.7
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.1e-67 261.2 197 68.0
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 7.4e-64 248.4 285 44.6
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 5.3e-62 242.3 326 45.7
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 3.8e-60 236.1 214 58.4
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 7.1e-59 231.9 195 62.1
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.7e-58 229.9 276 49.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 6.0e-58 228.8 186 64.5
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 6.7e-57 225.3 292 43.8
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.4e-54 216.9 157 67.5
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-52 211.1 180 61.7
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 8.4e-52 208.4 181 59.1
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.5e-50 203.0 328 40.5
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 5.1e-49 199.1 143 67.1
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 6.9e-46 188.7 133 70.7
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.4e-45 186.4 268 40.7
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 2.9e-44 183.3 131 68.7
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 2.5e-43 180.3 139 65.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.5e-40 171.0 131 67.9
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.8e-39 166.8 282 37.9
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 2.8e-39 166.8 150 60.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.1e-38 164.9 97 77.3
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.8e-38 164.1 292 34.2
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 9.1e-38 161.8 128 68.0
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 8.5e-36 155.2 119 64.7
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.0e-33 148.3 140 55.7
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.7e-33 145.6 196 43.4
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.4e-30 137.1 153 45.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 3.1e-30 136.7 178 42.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 4.5e-29 132.9 145 49.7
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-27 127.9 127 49.6
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.4e-27 127.9 142 47.2
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 2.7e-26 123.6 126 50.0
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.7e-26 123.6 80 67.5
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.5e-21 106.7 114 50.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.1e-18 95.9 194 36.6
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.6e-16 90.5 68 67.6
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.5e-13 80.1 78 56.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.5e-13 80.1 78 56.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.8e-12 76.6 77 54.5
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 7.5e-08 62.4 119 41.2
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.8e-07 60.5 60 55.0
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

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