Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 7.7e-150 533.9 287 100.0
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 3.6e-147 525.0 287 98.6
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.6e-145 518.8 287 97.6
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 8.0e-131 470.7 287 90.6
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 9.8e-129 463.8 305 85.2
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.9e-120 435.6 296 83.1
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 3.0e-109 399.1 292 77.1
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.3e-108 395.2 289 76.5
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.6e-107 393.3 289 76.5
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 7.6e-105 384.4 288 74.0
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.7e-104 383.3 288 73.6
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.9e-104 381.7 288 72.9
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 4.9e-104 381.7 287 72.8
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 4.9e-104 381.7 288 72.2
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 8.4e-104 380.9 288 74.3
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.4e-103 380.2 289 75.1
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.9e-103 379.8 288 72.6
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.9e-103 379.8 288 72.6
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.4e-103 379.4 288 74.7
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.4e-103 379.4 288 72.9
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.2e-102 377.1 286 72.4
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 7.8e-102 374.4 288 73.3
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 7.8e-102 374.4 290 73.1
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.3e-101 373.6 286 72.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.7e-101 373.2 289 73.4
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 3.0e-101 372.5 255 76.9
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.0e-101 372.5 302 69.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 5.1e-101 371.7 289 72.3
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 6.6e-101 371.3 308 69.5
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 8.7e-101 370.9 288 72.6
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 8.7e-101 370.9 288 71.5
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.1e-100 370.5 288 71.2
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.5e-100 370.2 288 71.9
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.5e-100 370.2 290 72.4
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.5e-100 369.4 287 72.5
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.3e-100 368.6 286 71.7
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 9.6e-100 367.5 267 74.9
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.6e-100 367.5 289 71.6
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 4.7e-99 365.2 288 70.5
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 2.4e-98 362.8 288 69.4
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 2.4e-98 362.8 287 70.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.1e-98 362.5 290 70.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.0e-98 362.1 288 69.4
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 5.3e-98 361.7 290 70.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 9.0e-98 360.9 267 72.7
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 9.0e-98 360.9 289 72.0
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 2.0e-97 359.8 286 71.0
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 3.4e-97 359.0 286 69.9
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.4e-97 359.0 287 70.4
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.4e-97 358.6 288 70.1
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 2.2e-96 356.3 286 71.0
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 2.2e-96 356.3 286 70.3
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 8.4e-96 354.4 288 68.4
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.1e-95 354.0 246 77.6
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.4e-95 353.6 242 77.7
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.9e-95 353.2 288 70.8
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 3.2e-95 352.4 290 69.7
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 7.1e-95 351.3 243 77.0
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 7.1e-95 351.3 287 69.0
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 7.1e-95 351.3 287 69.7
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 9.3e-95 350.9 242 76.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 9.3e-95 350.9 242 76.9
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.2e-94 350.5 288 69.1
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.6e-94 350.1 287 69.3
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-94 349.7 243 77.0
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.1e-94 349.7 288 69.4
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.6e-94 348.6 288 69.1
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 6.0e-94 348.2 294 69.0
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 6.0e-94 348.2 288 69.1
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 7.8e-94 347.8 242 76.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 7.8e-94 347.8 281 71.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.0e-93 347.4 255 72.9
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.0e-93 347.4 253 75.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-93 347.1 245 75.5
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.3e-93 347.1 290 70.0
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 2.3e-93 346.3 252 73.4
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.3e-93 346.3 288 69.1
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.9e-93 345.5 255 74.5
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.5e-92 343.6 263 71.1
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.9e-92 343.2 242 76.0
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.5e-92 342.8 294 70.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.3e-91 340.5 287 68.3
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.8e-91 339.3 242 75.2
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 2.8e-91 339.3 277 70.0
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 4.8e-91 338.6 289 67.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.4e-90 337.0 286 66.1
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.8e-90 336.7 288 66.7
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.4e-90 336.3 288 68.4
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.0e-90 335.5 242 74.4
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 4.0e-90 335.5 316 64.9
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 5.3e-90 335.1 287 67.6
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 5.3e-90 335.1 252 72.2
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 5.3e-90 335.1 252 72.2
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 9.0e-90 334.3 242 74.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 2.6e-89 332.8 242 74.0
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 7.6e-89 331.3 243 73.3
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 2.2e-88 329.7 288 64.2
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 8.4e-88 327.8 288 65.3
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 3.5e-86 322.4 291 65.3
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 3.5e-86 322.4 264 66.7
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 3.9e-85 318.9 286 65.0
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.5e-84 316.2 260 69.6
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.3e-82 308.5 260 69.2
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.9e-82 308.1 262 68.3
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.9e-80 302.8 229 78.6
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 5.1e-77 292.0 270 60.0
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.7e-77 291.6 288 62.2
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 8.7e-77 291.2 246 68.3
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 9.6e-76 287.7 211 76.3
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.2e-71 272.3 291 58.1
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 3.9e-69 265.8 288 55.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 3.3e-68 262.7 246 61.0
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.3e-67 260.8 295 56.3
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.2e-67 260.0 153 84.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 8.2e-67 258.1 153 83.7
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 5.9e-57 225.3 222 64.0
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-55 220.7 170 68.2
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 7.2e-55 218.4 258 49.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.2e-54 217.6 200 58.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.4e-53 214.2 125 85.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.1e-50 201.4 153 69.9
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 5.5e-47 192.2 153 64.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.0e-45 186.4 170 61.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-43 179.1 170 59.4
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.3e-42 175.6 189 57.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-41 174.5 156 61.5
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 5.5e-39 165.6 241 41.9
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 4.0e-37 159.5 289 42.9
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-34 151.4 105 71.4
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.6e-30 136.3 67 95.5
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 2.8e-22 110.2 141 55.3
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 6.8e-21 105.5 136 55.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 7.5e-20 102.1 73 64.4
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.4e-13 81.3 144 43.1
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 5.2e-13 79.3 135 47.4
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.6e-12 77.0 42 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.4e-10 71.2 173 34.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.1e-07 61.6 73 56.2
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 2.1e-06 57.4 46 67.4
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 6.2e-06 55.8 75 49.3


User provided reference genes

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