Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.0e-241 839.7 439 100.0
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.6e-239 832.4 439 99.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.6e-231 805.8 441 95.5
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.9e-180 635.6 427 78.9
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.6e-170 603.2 447 70.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.5e-170 602.1 426 73.0
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.5e-170 602.1 445 68.8
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 7.9e-170 600.9 447 69.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 7.9e-170 600.9 349 90.8
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.3e-168 595.1 454 68.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.9e-166 587.8 444 70.7
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 2.6e-165 585.9 449 67.7
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.6e-165 585.9 450 66.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.4e-165 585.5 450 70.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.4e-165 585.5 448 66.7
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.5e-165 585.1 426 71.4
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.4e-163 580.1 444 65.5
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.6e-162 576.6 447 66.7
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.1e-162 576.2 450 66.7
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 2.7e-162 575.9 445 67.6
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 4.6e-162 575.1 465 65.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 4.6e-162 575.1 465 65.2
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 6.0e-162 574.7 439 67.4
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.3e-161 573.5 449 65.5
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.3e-161 572.8 441 66.4
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.3e-161 572.8 442 67.2
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 5.1e-161 571.6 441 65.5
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.5e-160 570.1 454 67.2
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 7.4e-160 567.8 449 66.1
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-159 567.0 445 64.5
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.3e-159 567.0 454 66.1
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.6e-159 566.6 441 66.4
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 6.2e-159 564.7 443 63.9
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 8.2e-159 564.3 441 65.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 8.2e-159 564.3 445 67.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 8.2e-159 564.3 445 64.9
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-158 563.9 445 64.0
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 3.1e-158 562.4 447 66.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.2e-157 560.5 429 67.8
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.5e-157 560.1 440 68.4
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.6e-157 559.3 457 66.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 5.8e-157 558.1 440 66.1
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.6e-157 557.8 443 63.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-156 556.2 454 65.6
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 8.4e-156 554.3 449 64.6
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-155 552.7 454 62.6
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.5e-155 551.6 428 66.4
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.2e-154 550.4 445 63.6
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.2e-154 550.4 451 65.9
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.7e-154 549.3 438 66.0
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.7e-154 549.3 454 65.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.7e-154 549.3 497 61.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.5e-154 548.9 454 65.6
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-153 547.0 445 63.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.8e-153 546.6 454 65.2
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.3e-153 546.2 457 63.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.0e-153 545.8 454 65.0
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.9e-153 545.4 454 65.2
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 5.1e-153 545.0 435 64.1
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.7e-153 544.7 442 66.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.7e-151 538.9 440 63.9
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.8e-150 536.6 447 62.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 3.1e-150 535.8 439 66.3
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 9.0e-150 534.3 434 65.0
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.5e-149 533.5 429 64.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.0e-149 533.1 448 62.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 2.6e-149 532.7 429 65.3
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 3.4e-149 532.3 535 56.4
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 4.5e-149 531.9 422 71.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 7.7e-149 531.2 443 63.7
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.0e-148 530.8 434 63.6
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.7e-148 530.0 429 64.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.8e-148 528.9 429 64.8
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 6.5e-148 528.1 440 63.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 4.2e-147 525.4 462 62.8
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 5.5e-147 525.0 400 68.5
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.6e-146 523.5 435 64.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.1e-146 523.1 452 61.9
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 2.3e-145 519.6 452 61.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 8.8e-145 517.7 429 62.9
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.3e-143 513.8 443 61.2
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 6.9e-142 508.1 435 63.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 6.9e-142 508.1 434 62.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-141 507.3 445 60.9
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 2.0e-141 506.5 435 63.0
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 4.5e-141 505.4 403 67.5
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 2.9e-140 502.7 435 62.8
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.3e-136 489.2 439 58.5
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.2e-135 486.5 414 64.7
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.7e-135 485.7 432 57.9
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.0e-132 477.6 460 58.9
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.7e-132 476.9 439 61.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 4.8e-127 458.8 441 56.2
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.4e-126 457.2 452 54.0
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 7.0e-126 454.9 417 59.5
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.2e-125 454.1 445 55.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.3e-124 450.7 417 58.3
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 8.3e-119 431.4 271 78.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.1e-118 431.0 355 64.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.7e-114 415.6 435 52.0
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 2.6e-112 409.8 255 78.0
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.4e-112 409.1 263 76.8
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 6.3e-111 405.2 429 51.0
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 2.7e-109 399.8 322 63.4
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 5.0e-108 395.6 248 78.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.1e-106 388.7 422 51.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 3.7e-103 379.4 454 50.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 6.1e-98 362.1 229 79.0
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.0e-96 357.1 410 50.2
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.1e-89 334.7 482 43.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.5e-83 314.3 312 59.9
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 9.5e-83 311.6 283 59.0
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 8.1e-82 308.5 362 49.4
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.4e-80 302.8 285 61.4
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.4e-78 297.7 251 68.9
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 2.7e-77 293.5 322 54.7
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 6.6e-68 262.3 287 54.0
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.0e-65 253.1 243 55.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.0e-65 253.1 287 51.2
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.2e-63 247.3 213 62.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 5.3e-57 226.1 431 38.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.3e-55 221.5 390 38.2
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 3.3e-51 206.8 210 55.2
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 2.1e-50 204.1 262 44.7
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.2e-45 188.3 138 63.0
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.5e-45 186.8 185 57.8
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.3e-44 184.9 238 42.4
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 3.7e-42 176.8 198 52.5
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.4e-38 164.9 106 77.4
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 5.5e-38 162.9 85 90.6
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 8.7e-36 155.6 98 79.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.7e-31 141.4 74 89.2
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.9e-31 140.6 89 73.0
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.2e-26 124.4 258 32.9
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.7e-26 123.6 86 72.1
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-24 118.6 87 62.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-20 105.1 188 41.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 8.8e-20 102.4 67 70.1
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 7.0e-17 92.8 93 55.9
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.2e-15 87.8 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 9.4e-14 82.4 188 36.2
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.3e-11 73.9 84 53.6
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 4.4e-11 73.6 61 54.1
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.4e-11 73.6 62 61.3
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 7.2e-06 56.2 35 74.3
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 7.2e-06 56.2 42 64.3


User provided reference genes

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