Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g019750.3 Solanum lycopersicum HOM05D003387 ORTHO05D005400 6.4e-117 424.1 214 100.0
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 6.4e-117 424.1 214 100.0
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 2.1e-115 419.1 214 98.1
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 5.3e-111 404.4 214 93.5
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 5.8e-102 374.4 214 87.4
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.0e-101 373.6 214 85.0
Nitab4.5_0002445g0040 Nicotiana tabacum HOM05D003387 ORTHO05D005400 1.3e-101 373.2 214 86.4
Nitab4.5_0010347g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 1.7e-101 372.9 214 85.5
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 4.9e-101 371.3 213 85.9
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 6.5e-101 370.9 213 85.0
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 1.9e-100 369.4 214 85.5
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 3.2e-100 368.6 214 84.6
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 4.2e-100 368.2 214 85.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 7.1e-100 367.5 215 86.0
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.6e-99 366.3 214 85.0
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 2.1e-99 365.9 213 84.5
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 2.1e-99 365.9 213 84.5
Cfa018305 Carpinus fangiana HOM05D003387 ORTHO05D005400 2.7e-99 365.5 214 83.6
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 2.7e-99 365.5 214 84.6
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 3.5e-99 365.2 214 84.1
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 3.5e-99 365.2 214 84.6
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 3.5e-99 365.2 214 84.6
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 3.5e-99 365.2 213 84.5
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 4.6e-99 364.8 214 85.0
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.0e-99 364.4 214 85.0
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 6.0e-99 364.4 214 85.0
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 6.0e-99 364.4 214 84.1
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 6.0e-99 364.4 214 84.1
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.3e-98 363.2 214 83.2
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 1.3e-98 363.2 214 84.6
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 2.3e-98 362.5 213 84.5
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 2.3e-98 362.5 213 84.5
Cpa.g.sc49.99 Carica papaya HOM05D003387 ORTHO05D005400 3.0e-98 362.1 208 85.1
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 3.0e-98 362.1 214 84.6
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.0e-98 362.1 214 82.2
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 3.9e-98 361.7 214 84.1
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 5.1e-98 361.3 213 84.0
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 5.1e-98 361.3 214 84.1
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 6.7e-98 360.9 214 83.2
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 6.7e-98 360.9 214 82.2
Haze_17786 Corylus avellana HOM05D003387 ORTHO05D005400 8.7e-98 360.5 214 82.7
FAN27G0365 Fragaria x ananassa HOM05D003387 ORTHO05D005400 8.7e-98 360.5 214 84.6
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 8.7e-98 360.5 214 83.6
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 8.7e-98 360.5 214 83.2
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 8.7e-98 360.5 214 81.8
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.1e-97 360.1 213 83.1
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.1e-97 360.1 214 83.2
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 1.5e-97 359.8 213 84.0
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 1.9e-97 359.4 213 83.6
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.9e-97 359.4 214 84.1
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 1.9e-97 359.4 213 83.6
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 2.5e-97 359.0 214 81.3
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 2.5e-97 359.0 214 83.2
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 3.3e-97 358.6 214 83.2
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 4.3e-97 358.2 214 82.7
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 5.7e-97 357.8 214 82.2
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 5.7e-97 357.8 214 79.9
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 7.4e-97 357.5 214 81.3
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 7.4e-97 357.5 214 81.3
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 7.4e-97 357.5 214 79.9
vmacro01482 Vaccinium macrocarpon HOM05D003387 ORTHO05D005400 7.4e-97 357.5 239 76.6
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 9.6e-97 357.1 214 81.8
Actinidia29542 Actinidia chinensis HOM05D003387 ORTHO05D005400 1.3e-96 356.7 214 82.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 1.3e-96 356.7 214 81.8
QL02p037730 Quercus lobata HOM05D003387 ORTHO05D005400 1.3e-96 356.7 213 82.2
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 1.3e-96 356.7 213 82.2
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 1.6e-96 356.3 214 81.3
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 1.6e-96 356.3 214 81.3
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.1e-96 355.9 214 80.4
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 2.8e-96 355.5 214 80.8
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.8e-96 355.5 214 80.8
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 2.8e-96 355.5 213 82.6
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 80.8
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 80.8
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 80.8
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 81.3
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 80.4
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 3.7e-96 355.1 214 80.8
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 6.3e-96 354.4 213 83.1
COL.COLO4_03566 Corchorus olitorius HOM05D003387 ORTHO05D005400 8.2e-96 354.0 213 81.7
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 1.1e-95 353.6 214 80.4
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.1e-95 353.6 212 82.1
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.4e-95 353.2 214 80.4
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 2.4e-95 352.4 214 81.8
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.1e-95 352.1 214 80.8
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 3.1e-95 352.1 214 80.8
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 4.1e-95 351.7 214 80.4
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 4.1e-95 351.7 214 80.4
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 4.1e-95 351.7 214 80.4
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 5.3e-95 351.3 214 79.9
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 5.3e-95 351.3 214 80.4
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 6.9e-95 350.9 214 80.4
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.2e-94 350.1 209 81.8
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 1.5e-94 349.7 214 79.4
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.5e-94 349.7 214 80.8
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 1.5e-94 349.7 214 79.4
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 2.0e-94 349.4 214 81.3
VMungo0720G1662 Vigna mungo HOM05D003387 ORTHO05D005400 2.0e-94 349.4 214 79.9
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 2.6e-94 349.0 219 81.7
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 3.4e-94 348.6 214 79.0
Lalb_Chr19g0130191 Lupinus albus HOM05D003387 ORTHO05D005400 3.4e-94 348.6 214 79.9
Sabra05G0148200 Salix brachista HOM05D003387 ORTHO05D005400 3.4e-94 348.6 213 80.3
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 4.5e-94 348.2 214 80.4
QL06p031240 Quercus lobata HOM05D003387 ORTHO05D005400 7.6e-94 347.4 215 79.5
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 1.0e-93 347.1 214 79.9
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 2.2e-93 345.9 214 79.0
EL10Ac1g01585 Beta vulgaris HOM05D003387 ORTHO05D005400 5.0e-93 344.7 214 79.0
AUR62026677 Chenopodium quinoa HOM05D003387 ORTHO05D005400 5.0e-93 344.7 214 79.0
AUR62040585 Chenopodium quinoa HOM05D003387 ORTHO05D005400 6.5e-93 344.4 214 79.0
CDE08G0132 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 3.5e-91 338.6 214 77.1
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 3.5e-91 338.6 209 78.5
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 1.0e-90 337.0 214 77.1
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 1.3e-90 336.7 214 77.1
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 1.8e-90 336.3 214 76.6
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 2.3e-90 335.9 214 77.6
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 3.0e-90 335.5 213 76.5
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 3.9e-90 335.1 214 75.2
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 5.1e-90 334.7 214 77.6
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 6.7e-90 334.3 201 81.6
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 8.7e-90 334.0 223 75.3
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 1.1e-89 333.6 214 75.2
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 1.5e-89 333.2 214 77.6
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 5.7e-89 331.3 212 77.8
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 5.7e-89 331.3 209 77.0
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 2.2e-88 329.3 202 78.7
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 6.3e-88 327.8 214 72.9
arahy.Tifrunner.gnm1.ann1.BQ9MTK Arachis hypogaea HOM05D003387 ORTHO05D005400 2.4e-87 325.9 224 73.2
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 2.4e-87 325.9 212 75.5
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 3.1e-87 325.5 214 74.8
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 3.1e-87 325.5 214 72.9
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 1.5e-86 323.2 216 74.5
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.5e-86 323.2 191 83.8
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 5.9e-86 321.2 214 73.8
Zm00001eb289150 Zea mays HOM05D003387 ORTHO05D005400 1.0e-85 320.5 214 72.0
AUR62003637 Chenopodium quinoa HOM05D003387 ORTHO05D005400 6.5e-85 317.8 212 73.1
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 1.4e-84 316.6 214 69.6
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 2.1e-83 312.8 223 74.0
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 1.4e-82 310.1 208 72.1
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 3.1e-79 298.9 214 68.7
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 4.1e-79 298.5 214 67.3
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 6.9e-79 297.7 214 68.7
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 7.7e-78 294.3 214 67.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 1.7e-77 293.1 216 68.1
Nitab4.5_0003909g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 5.0e-77 291.6 214 72.9
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 1.4e-76 290.0 202 66.8
HPP92_001090 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.1e-73 280.4 214 64.5
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 1.1e-71 273.9 214 62.6
arahy.Tifrunner.gnm1.ann1.NR2FSQ Arachis hypogaea HOM05D003387 ORTHO05D005400 4.7e-67 258.5 184 69.6
Peaxi162Scf00249g00068 Petunia axillaris HOM05D003387 ORTHO05D031551 5.3e-63 245.0 211 64.9
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 1.9e-60 236.5 214 60.3
Medtr6g037540 Medicago truncatula HOM05D003387 ORTHO05D030081 3.6e-43 179.1 128 68.8
SMO146G0120 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 9.8e-41 171.0 202 46.0
SMO171G0107 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 6.2e-35 151.8 197 45.2
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.0e-34 151.0 84 86.9
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 3.4e-33 146.0 84 82.1
TPR.G28006 Trifolium pratense HOM05D003387 ORTHO05D030081 9.8e-33 144.4 101 71.3
arahy.Tifrunner.gnm1.ann1.M2ZNIJ Arachis hypogaea HOM05D003387 ORTHO05D031551 8.3e-32 141.4 82 80.5
Mapoly0051s0071 Marchantia polymorpha HOM05D003387 ORTHO05D255399 1.1e-31 141.0 174 40.8
MD00G1066300 Malus domestica HOM05D003387 ORTHO05D005400 2.4e-31 139.8 84 81.0
Medtr6g037510 Medicago truncatula HOM05D003387 ORTHO05D031551 2.7e-30 136.3 84 79.8
MD00G1066200 Malus domestica HOM05D003387 ORTHO05D030081 3.5e-30 136.0 78 80.8
SMO171G0059 Selaginella moellendorffii HOM05D003387 ORTHO05D376012 5.2e-26 122.1 207 38.6
Medtr8g072130 Medicago truncatula HOM05D003387 ORTHO05D030081 5.4e-23 112.1 121 51.2
Carub.0001s4466 Capsella rubella HOM05D003387 ORTHO05D114561 1.1e-18 97.8 80 67.5
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 9.9e-17 91.3 85 55.3
Medtr6g037520 Medicago truncatula HOM05D003387 ORTHO05D257462 3.6e-11 72.8 51 60.8
SMO196G0024 Selaginella moellendorffii HOM05D003387 ORTHO05D375944 3.1e-10 69.7 140 33.6
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 1.2e-09 67.8 36 88.9
Nn6g35013 Nelumbo nucifera HOM05D003387 ORTHO05D005400 2.2e-08 63.5 42 71.4
AUR62017947 Chenopodium quinoa HOM05D003387 ORTHO05D138110 3.2e-07 59.7 36 77.8
Nn6g35117 Nelumbo nucifera HOM05D000428 ORTHO05D000582 2.7e-06 56.6 192 29.2


User provided reference genes

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