Gene: PGR042G1308
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR042G1308
- Transcript Identifier PGR042G1308.01
- Gene Type Coding gene
- Location NC_045130.1 : 6655141-6659191 : negative
Gene Family Information
- ID HOM05D003387
- #Genes/#Species 202/90
- Phylogenetic origin
- ID ORTHO05D005400
- #Genes/#Species 158/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031393362.1
- name LOC116205057
- name XM_031537502.1
- id gene-LOC116205057
- uniprot A0A218XJB0
Descriptions
- product polypyrimidine tract-binding protein homolog 3, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006397 | IEA | InterPro | mRNA processing | |
| GO:0006417 | ISO | PLAZA Integrative Orthology | regulation of translation | AT1G43190 |
| GO:0043484 | ISO | PLAZA Integrative Orthology | regulation of RNA splicing | AT1G43190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G43190 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT1G43190 |
| GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT1G43190 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR021790 | PTBP1, RNA recognition motif 2-like |
| IPR035979 | RNA-binding domain superfamily |
| IPR034795 | PTBPH3, RNA recognition motif 1 |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR006536 | HnRNP-L/PTB |
| IPR034797 | PTBPH3, RNA recognition motif 3 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |