Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 7.5e-194 681.8 933 100.0
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.1e-184 649.8 933 98.1
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.2e-160 568.5 337 87.8
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 2.2e-121 441.0 945 65.9
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.5e-114 418.3 944 73.8
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.6e-103 381.7 346 62.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.1e-103 381.3 341 62.5
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.0e-102 379.0 359 61.8
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.1e-99 369.0 334 63.5
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.9e-99 366.3 339 64.9
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.9e-96 358.2 348 61.2
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 9.4e-96 355.9 349 60.2
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.2e-95 355.5 350 59.7
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.5e-93 348.6 343 56.9
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.5e-93 348.6 335 58.8
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 7.4e-93 346.3 376 56.6
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 1.7e-92 345.1 290 64.5
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.8e-91 341.7 341 55.4
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 6.9e-91 339.7 320 61.2
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.2e-90 339.0 385 54.0
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.6e-90 337.8 268 66.8
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.3e-89 335.5 326 61.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.7e-89 335.1 289 65.4
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.2e-89 334.7 251 66.5
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.9e-89 334.3 352 57.1
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 1.4e-88 332.0 299 63.9
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.9e-88 331.6 332 61.4
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.5e-88 331.3 346 54.9
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.2e-88 330.9 295 61.4
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 4.2e-88 330.5 354 52.0
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 9.4e-88 329.3 343 53.4
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.7e-87 327.8 349 54.4
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 4.7e-87 327.0 356 56.5
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.0e-86 325.9 268 67.9
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 3.0e-86 324.3 354 57.1
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 6.7e-86 323.2 339 57.8
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.1e-85 322.4 344 56.7
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.0e-85 321.6 328 55.8
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.0e-85 321.6 352 55.1
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 7.4e-85 319.7 341 58.1
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 7.4e-85 319.7 321 57.3
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 7.4e-85 319.7 350 54.9
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 9.7e-85 319.3 232 72.0
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.7e-84 318.5 357 56.3
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 4.8e-84 317.0 343 56.9
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 6.3e-84 316.6 193 75.6
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.2e-84 316.2 258 64.3
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.2e-84 316.2 258 64.3
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 8.2e-84 316.2 234 69.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 8.2e-84 316.2 329 59.9
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 8.2e-84 316.2 343 52.5
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.8e-83 315.1 358 55.6
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.4e-83 314.7 275 64.7
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 4.1e-83 313.9 337 57.3
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 4.1e-83 313.9 297 57.6
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 5.3e-83 313.5 337 57.3
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.2e-82 312.4 296 59.5
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 3.5e-82 310.8 257 61.1
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 3.5e-82 310.8 319 55.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 3.5e-82 310.8 337 56.1
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.3e-81 308.9 281 59.8
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 3.8e-81 307.4 314 58.6
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.8e-81 307.4 328 54.9
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 6.5e-81 306.6 748 97.2
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.5e-81 306.6 315 58.4
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 8.5e-81 306.2 342 54.7
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 8.5e-81 306.2 258 67.1
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.1e-80 305.8 358 53.4
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-80 305.8 331 58.0
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.5e-80 304.7 201 74.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 9.4e-80 302.8 201 74.1
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.6e-79 302.0 303 58.4
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.1e-79 301.6 201 73.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 2.7e-79 301.2 280 59.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 4.7e-79 300.4 246 65.9
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 6.1e-79 300.1 353 52.4
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.0e-78 299.3 319 56.7
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.0e-78 299.3 324 55.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 8.8e-78 296.2 261 60.9
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 8.8e-78 296.2 318 55.3
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 1.2e-77 295.8 247 65.2
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 4.4e-77 293.9 300 56.0
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 5.7e-77 293.5 242 65.3
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 5.7e-77 293.5 331 52.6
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.3e-76 292.4 320 56.6
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.1e-75 289.3 336 53.9
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.4e-75 288.9 347 51.6
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.4e-75 288.1 312 56.7
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 3.1e-75 287.7 350 50.9
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 4.5e-74 283.9 294 55.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 7.7e-74 283.1 312 49.0
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.1e-64 252.7 242 57.0
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 3.2e-64 251.1 142 85.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 9.5e-64 249.6 189 65.6
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 9.5e-64 249.6 326 50.9
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.4e-62 245.7 369 47.7
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 2.0e-61 241.9 239 53.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 9.2e-59 233.0 151 74.2
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.9e-58 230.3 165 67.3
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 4.3e-56 224.2 131 82.4
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.0e-54 217.6 114 93.0
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 5.4e-51 207.2 186 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 4.6e-50 204.1 187 51.3
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 7.3e-48 196.8 127 76.4
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.0e-46 191.0 183 49.2
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.2e-46 190.7 117 82.9
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 4.1e-43 181.0 191 46.6
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 7.5e-37 160.2 333 42.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.9e-36 158.3 191 40.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.4e-36 157.1 182 44.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.4e-35 155.2 182 44.0
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.3e-33 149.4 111 69.4
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.3e-33 148.7 104 72.1
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.9e-32 145.6 198 42.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.6e-31 141.4 91 72.5
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.1e-30 138.3 105 66.7
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 5.2e-30 137.5 114 67.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.8e-30 137.1 74 83.8
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.9e-30 136.7 85 77.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 4.4e-29 134.4 109 64.2
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.3e-28 132.9 119 62.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 8.4e-28 130.2 111 61.3
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 6.0e-26 124.0 111 61.3
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.0e-25 123.2 78 64.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.3e-25 122.1 109 61.5
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.1e-23 115.5 91 59.3
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.8e-23 115.2 81 63.0
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 2.8e-23 115.2 238 39.9
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-22 112.8 105 59.0
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.0e-17 95.1 70 68.6
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 5.3e-14 84.3 46 82.6
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.4e-13 81.6 147 35.4
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.7e-12 79.3 76 59.2
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.4e-11 74.3 45 73.3
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.3e-09 69.7 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 3.9e-09 68.2 81 51.9
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 1.1e-06 60.1 182 28.6
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 3.1e-06 58.5 150 31.3
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 4.0e-06 58.2 92 35.9
CDE11G0470 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 4.0e-06 58.2 97 36.1
CDE05G1401 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 5.3e-06 57.8 97 36.1
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 5.3e-06 57.8 152 32.2
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 6.9e-06 57.4 182 29.1


User provided reference genes

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